Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 CYP4A27P-201ENST00000567218 190 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AL355375.2-201ENST00000574825 175 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 MIR3923-201ENST00000579521 83 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 MIR5089-201ENST00000580047 84 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AL109918.3-201ENST00000603072 338 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AL627230.6-201ENST00000611129 280 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AC005520.5-201ENST00000613926 164 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AC137590.2-201ENST00000619709 240 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AC112487.2-201ENST00000637950 304 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 ZNF299P-201ENST00000406845 1804 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 RNU4-73P-201ENST00000363164 141 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 RNU6-1059P-201ENST00000363752 98 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 SNORA5B-201ENST00000363786 132 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 RNU6-1188P-201ENST00000363795 107 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 RNU1-91P-201ENST00000364746 163 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 AL353752.1-201ENST00000454946 260 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 SNORA48.11-201ENST00000517015 89 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 SNORA31.25-201ENST00000517242 134 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 RNU6-586P-201ENST00000517265 104 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 AL078605.1-201ENST00000603529 500 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 Z98751.3-201ENST00000604447 521 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 AL138963.2-201ENST00000605137 226 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 AC009229.3-201ENST00000608056 282 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 AC133104.2-201ENST00000615272 193 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 AL359757.2-201ENST00000624309 274 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 AL359697.1-201ENST00000624879 587 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 SCARNA4-201ENST00000629045 128 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 AC243829.7-201ENST00000633081 225 ntBASIC1.92□□□□□ -2.1
CCDC28BQ9BUN5 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 Y_RNA.2-201ENST00000362330 96 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 RNU4-15P-201ENST00000362613 141 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 RNU4-9P-201ENST00000364951 139 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 SNORA75.4-201ENST00000391278 119 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 RNA5SP201-201ENST00000410316 124 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 AC243428.1-201ENST00000421099 264 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 AC236972.2-201ENST00000434979 310 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 CKS1BP2-201ENST00000497342 240 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 MRPS17P9-201ENST00000511924 393 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 RNU2-19P-201ENST00000517288 84 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 MRPS36P4-201ENST00000534436 298 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 APOOP3-201ENST00000536787 586 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 AC018630.3-201ENST00000542637 96 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 FRG2DP-202ENST00000566967 323 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 C8orf59P2-201ENST00000603441 271 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 7SK.7-201ENST00000603504 247 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 U4atac.1-201ENST00000618345 95 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 AC104985.2-201ENST00000620598 500 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 AL669831.3-213ENST00000636676 183 ntBASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.91□□□□□ -2.1
CCDC28BQ9BUN5 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
CCDC28BQ9BUN5 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.9□□□□□ -2.1
CCDC28BQ9BUN5 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.1
CCDC28BQ9BUN5 RNU6-1159P-201ENST00000362933 107 ntBASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 RNU6-595P-201ENST00000363944 107 ntBASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 SNORD115-32-201ENST00000364079 82 ntBASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 RNA5SP494-201ENST00000410653 129 ntBASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 MTCO2P27-201ENST00000420740 428 ntBASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 AL358453.1-201ENST00000422522 250 ntBASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 CBX3P6-201ENST00000430257 527 ntBASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 AL353705.4-201ENST00000449661 238 ntBASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 RN7SKP210-201ENST00000459176 261 ntBASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 Y_RNA.632-201ENST00000459189 102 ntBASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 RPL23AP75-201ENST00000491601 451 ntBASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 AC021146.2-201ENST00000504736 556 ntBASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 AC007229.1-201ENST00000590455 412 ntBASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.9□□□□□ -2.11
CCDC28BQ9BUN5 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 snoU2_19.1-201ENST00000362361 80 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 RNA5SP125-201ENST00000364843 120 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms