Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC007671.2-201ENST00000637344 619 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 AC018630.2-201ENST00000534866 2403 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 AL442644.1-201ENST00000454390 3105 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 AC008163.1-202ENST00000636004 2889 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 RNY1P12-201ENST00000364251 105 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 SNORA4.2-201ENST00000365313 147 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 RNU5E-5P-201ENST00000365379 116 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 AL117339.3-201ENST00000418733 162 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 USP9YP14-201ENST00000430663 563 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 AC104850.1-201ENST00000435940 476 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 MTCO2P6-201ENST00000463134 685 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 AC091874.1-201ENST00000511402 339 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 RNU6-1178P-201ENST00000516674 107 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 RNU2-46P-201ENST00000517038 113 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 RNA5SP503-201ENST00000517047 117 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 MIR4661-201ENST00000582720 75 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 AC011712.1-201ENST00000588959 234 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 AC107304.1-201ENST00000604229 296 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 RPL17P51-201ENST00000605218 238 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 AC009994.1-201ENST00000606889 253 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 AL353149.1-201ENST00000610667 244 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 AL021879.1-201ENST00000611756 288 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 AC005520.5-201ENST00000613926 164 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 AC068647.2-201ENST00000637380 353 ntBASIC0.78□□□□□ -2.28
CCDC112Q8NEF3 AC121333.1-201ENST00000567488 2709 ntBASIC0.77□□□□□ -2.29
CCDC112Q8NEF3 RNU6-1105P-201ENST00000384774 107 ntBASIC0.77□□□□□ -2.29
CCDC112Q8NEF3 PIGFP2-201ENST00000421400 651 ntBASIC0.77□□□□□ -2.29
CCDC112Q8NEF3 EPS15P1-201ENST00000448836 336 ntBASIC0.77□□□□□ -2.29
CCDC112Q8NEF3 USP9YP12-201ENST00000450481 570 ntBASIC0.77□□□□□ -2.29
CCDC112Q8NEF3 MTCYBP1-201ENST00000454315 1119 ntBASIC0.77□□□□□ -2.29
CCDC112Q8NEF3 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC0.77□□□□□ -2.29
CCDC112Q8NEF3 AC067942.3-201ENST00000512025 362 ntBASIC0.77□□□□□ -2.29
CCDC112Q8NEF3 PSMC1P5-201ENST00000512850 177 ntBASIC0.77□□□□□ -2.29
CCDC112Q8NEF3 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.77□□□□□ -2.29
CCDC112Q8NEF3 CYP4A27P-201ENST00000567218 190 ntBASIC0.77□□□□□ -2.29
CCDC112Q8NEF3 MIR4742-201ENST00000581069 85 ntBASIC0.77□□□□□ -2.29
CCDC112Q8NEF3 MIR4653-201ENST00000585107 83 ntBASIC0.77□□□□□ -2.29
CCDC112Q8NEF3 Z98751.3-201ENST00000604447 521 ntBASIC0.77□□□□□ -2.29
CCDC112Q8NEF3 AC064872.1-201ENST00000604823 1072 ntBASIC0.77□□□□□ -2.29
CCDC112Q8NEF3 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.77□□□□□ -2.29
CCDC112Q8NEF3 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 RNU6-552P-201ENST00000362869 119 ntBASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 Y_RNA.367-201ENST00000365544 101 ntBASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 RNU6-877P-201ENST00000383868 107 ntBASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 AC106883.1-201ENST00000418805 562 ntBASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 AC069257.2-201ENST00000441819 155 ntBASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 AL133217.1-201ENST00000450980 425 ntBASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 AL163973.1-201ENST00000484753 577 ntBASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 RPS23P5-201ENST00000495419 428 ntBASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 AC016632.1-201ENST00000503994 196 ntBASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 MTCO3P7-201ENST00000510008 774 ntBASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 AC011406.1-201ENST00000512440 370 ntBASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 MTND1P8-201ENST00000571424 950 ntBASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 MIR6835-201ENST00000621552 64 ntBASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 MIR338-201ENST00000636369 67 ntBASIC0.76□□□□□ -2.29
CCDC112Q8NEF3 RNU6-1287P-201ENST00000362914 107 ntBASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 Y_RNA.132-201ENST00000363421 102 ntBASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 RNU6-418P-201ENST00000384035 107 ntBASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 SNORA36A-201ENST00000384221 132 ntBASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 RNU6-1060P-201ENST00000384664 107 ntBASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 RNU1-139P-201ENST00000391307 165 ntBASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 RNU2-8P-201ENST00000410727 190 ntBASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 AC008628.2-201ENST00000502605 298 ntBASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 LRRC34P2-201ENST00000514850 553 ntBASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 AC004817.2-201ENST00000561794 651 ntBASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 AC090517.1-201ENST00000569307 266 ntBASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 MIR4775-201ENST00000581168 75 ntBASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 Z99289.3-201ENST00000605586 594 ntBASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 MIR7844-201ENST00000616161 122 ntBASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 AL078595.3-201ENST00000623815 1166 ntBASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 SNORA43.4-201ENST00000629559 138 ntBASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.75□□□□□ -2.29
CCDC112Q8NEF3 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 HSBP1P2-201ENST00000299671 229 ntBASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 RNU6-545P-201ENST00000362681 104 ntBASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 RNU6-534P-201ENST00000364877 106 ntBASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 RNU6-74P-201ENST00000384235 107 ntBASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 RNU6-1026P-201ENST00000384465 108 ntBASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 MIR216A-201ENST00000385063 110 ntBASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 AC002486.1-201ENST00000435098 391 ntBASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 C1DP4-201ENST00000455429 424 ntBASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 AL162395.1-201ENST00000457882 422 ntBASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 RNU6-165P-201ENST00000517170 99 ntBASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 SNORA25.17-201ENST00000517184 124 ntBASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms