Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC-0.19□□□□□ -2.44
CSPG4Q6UVK1 MIR610-201ENST00000385139 96 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 SNORA12.1-201ENST00000390873 148 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 AL451046.2-201ENST00000403074 277 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 RNU2-42P-201ENST00000410697 113 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 AC013262.1-201ENST00000426710 252 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 AC243964.1-201ENST00000441814 261 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 MTND5P2-201ENST00000442927 1142 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 NDUFA4P2-201ENST00000489989 244 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 HMGB1P28-201ENST00000507778 552 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 LRRC6P1-201ENST00000532188 885 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 AC138869.1-201ENST00000568623 124 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 AC004223.2-201ENST00000590309 544 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 AC080078.2-201ENST00000603766 501 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 AL136363.2-201ENST00000604173 851 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 PRELID3BP2-201ENST00000605362 201 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 CTHRC1P1-201ENST00000605383 469 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 SNORD31B-201ENST00000364977 69 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 RNU6-40P-201ENST00000384254 107 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 BX664727.1-201ENST00000416024 466 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 AC023824.3-201ENST00000569003 562 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 TMF1P1-201ENST00000576058 373 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 MIR4742-201ENST00000581069 85 ntBASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC-0.2□□□□□ -2.44
CSPG4Q6UVK1 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 SNORA36.1-201ENST00000363424 132 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 RNU6-743P-201ENST00000364151 106 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 SNORA32.1-201ENST00000364514 115 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 SNORD14C-201ENST00000365382 88 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 SNORA75B-201ENST00000384053 137 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 SNORA12.2-201ENST00000391040 156 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 RNA5SP467-201ENST00000391274 118 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 C1DP2-201ENST00000418167 426 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 AC123900.1-201ENST00000420390 96 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 ELOCP30-201ENST00000447108 299 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 C1DP4-201ENST00000455429 424 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 AC016925.1-201ENST00000458303 298 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 AC114981.1-201ENST00000503897 678 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 SNORA25.12-201ENST00000516202 82 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 RNU6-917P-201ENST00000516294 104 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 AC090502.2-201ENST00000549267 280 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 MTND1P15-201ENST00000579262 949 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 AC078795.2-201ENST00000602835 1252 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 AL929325.1-201ENST00000603096 117 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 MIR8076-201ENST00000611401 83 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 PART1_2.1-201ENST00000612397 250 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 RNY4P16-201ENST00000364768 94 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 RNU6-701P-201ENST00000384059 107 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 MIR548H2-201ENST00000408874 88 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 SNORD71-201ENST00000411292 86 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 MTCO3P41-201ENST00000414801 328 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 AL356583.2-201ENST00000426536 280 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 RNFT1P2-201ENST00000443064 757 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 AC010531.2-201ENST00000465012 153 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 AF235103.2-201ENST00000525753 346 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 AC109446.1-201ENST00000566172 220 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 UGP2-231ENST00000627474 264 ntTSL 5 BASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 AC006927.4-201ENST00000639187 543 ntBASIC-0.21□□□□□ -2.44
CSPG4Q6UVK1 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC-0.22□□□□□ -2.44
CSPG4Q6UVK1 RNU6-1066P-201ENST00000363573 105 ntBASIC-0.22□□□□□ -2.44
CSPG4Q6UVK1 MIR16-1-201ENST00000385271 89 ntBASIC-0.22□□□□□ -2.44
CSPG4Q6UVK1 MIR653-201ENST00000385279 96 ntBASIC-0.22□□□□□ -2.44
CSPG4Q6UVK1 MIR760-201ENST00000390220 80 ntBASIC-0.22□□□□□ -2.44
CSPG4Q6UVK1 RNA5SP390-201ENST00000410191 113 ntBASIC-0.22□□□□□ -2.44
CSPG4Q6UVK1 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC-0.22□□□□□ -2.44
CSPG4Q6UVK1 SNRPEP8-201ENST00000442866 260 ntBASIC-0.22□□□□□ -2.44
CSPG4Q6UVK1 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC-0.22□□□□□ -2.44
CSPG4Q6UVK1 TMEM251P1-201ENST00000503717 318 ntBASIC-0.22□□□□□ -2.44
CSPG4Q6UVK1 AC112693.2-201ENST00000556538 232 ntBASIC-0.22□□□□□ -2.44
CSPG4Q6UVK1 SNORA59B-202ENST00000578183 701 ntBASIC-0.22□□□□□ -2.44
CSPG4Q6UVK1 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC-0.22□□□□□ -2.44
CSPG4Q6UVK1 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC-0.22□□□□□ -2.44
CSPG4Q6UVK1 MTND4P21-201ENST00000453886 1357 ntBASIC-0.22□□□□□ -2.45
CSPG4Q6UVK1 RNU6-369P-201ENST00000362515 102 ntBASIC-0.22□□□□□ -2.45
CSPG4Q6UVK1 SNORA25.3-201ENST00000363205 127 ntBASIC-0.22□□□□□ -2.45
CSPG4Q6UVK1 RNU6-839P-201ENST00000363347 108 ntBASIC-0.22□□□□□ -2.45
CSPG4Q6UVK1 SNORD115-24-201ENST00000363528 82 ntBASIC-0.22□□□□□ -2.45
CSPG4Q6UVK1 MIR643-201ENST00000385267 97 ntBASIC-0.22□□□□□ -2.45
CSPG4Q6UVK1 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC-0.22□□□□□ -2.45
CSPG4Q6UVK1 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC-0.22□□□□□ -2.45
CSPG4Q6UVK1 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC-0.22□□□□□ -2.45
CSPG4Q6UVK1 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC-0.22□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms