Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC009963.1-201ENST00000417265 157 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 MTCO3P29-201ENST00000432119 779 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 IPO7P1-201ENST00000442031 636 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 snoU13.30-201ENST00000458951 104 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 RPL23AP75-201ENST00000491601 451 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 AC104564.1-201ENST00000493028 407 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 AC091874.1-201ENST00000511402 339 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 RNU5B-3P-201ENST00000516601 115 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 RPPH1-2P-201ENST00000516688 293 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 MRPS36P4-201ENST00000534436 298 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 AC004486.1-201ENST00000546846 233 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.05□□□□□ -1.92
VPS53Q5VIR6 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS53Q5VIR6 AC090897.2-201ENST00000581715 130 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS53Q5VIR6 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS53Q5VIR6 AC080128.1-201ENST00000474389 1917 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 AL109809.4-201ENST00000603520 2185 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS53Q5VIR6 AL136360.1-201ENST00000503377 1900 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 Y_RNA.47-201ENST00000362697 108 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 Y_RNA.452-201ENST00000384202 108 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 MIR518C-201ENST00000384822 101 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 MIR628-201ENST00000385229 95 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
VPS53Q5VIR6 RNU6-1328P-201ENST00000410938 106 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS53Q5VIR6 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS53Q5VIR6 AP000705.1-201ENST00000454567 350 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 RNU7-169P-201ENST00000459456 61 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 AC010655.3-201ENST00000478818 450 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 AC016632.1-201ENST00000503994 196 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 RNA5SP112-201ENST00000515937 99 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 RNA5SP148-201ENST00000516527 94 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 MIR2355-201ENST00000517199 87 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS53Q5VIR6 MIR3162-201ENST00000581818 82 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 MIR4503-201ENST00000582187 83 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 MIR3670-2-201ENST00000582974 65 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 MIR3670-1-201ENST00000584160 65 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 MIR3670-3-201ENST00000584855 65 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 RPL12P50-201ENST00000603116 116 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 RNU6-91P-201ENST00000607774 107 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 MIR3670-4-201ENST00000612260 65 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 MIR6817-201ENST00000615588 66 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 AL449363.1-201ENST00000617815 186 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 SNORA43.4-201ENST00000629559 138 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 RBBP8P1-201ENST00000449447 1844 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.04□□□□□ -1.92
VPS53Q5VIR6 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.04□□□□□ -1.92
VPS53Q5VIR6 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.03□□□□□ -1.92
VPS53Q5VIR6 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
VPS53Q5VIR6 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
VPS53Q5VIR6 RNU4-50P-201ENST00000364361 141 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 Y_RNA.276-201ENST00000364732 109 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 Y_RNA.551-201ENST00000384661 102 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 Y_RNA.574-201ENST00000384766 95 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 MIR1302-3-201ENST00000408128 138 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 AC078809.1-201ENST00000427601 140 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 AC073910.1-201ENST00000445047 438 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 AL353705.4-201ENST00000449661 238 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 OR2AQ1P-201ENST00000451972 200 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 MTCO3P8-201ENST00000453691 755 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 SNORA59A-201ENST00000459326 152 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 AP001324.2-201ENST00000461163 319 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 RPL30P1-201ENST00000488676 339 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 MRPS35P2-201ENST00000508242 191 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 AC023141.11-201ENST00000508864 202 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 SCARNA3-201ENST00000517097 143 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 AC004817.2-201ENST00000561794 651 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 MIR5571-201ENST00000577998 113 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 AC010928.2-201ENST00000588017 287 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 RMST_6.1-201ENST00000611980 203 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 ZNF72P-201ENST00000425869 1908 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 AP000560.1-201ENST00000624150 1937 ntBASIC3.03□□□□□ -1.92
VPS53Q5VIR6 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.02□□□□□ -1.93
VPS53Q5VIR6 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
VPS53Q5VIR6 AC002543.1-201ENST00000299783 1954 ntBASIC3.02□□□□□ -1.93
VPS53Q5VIR6 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.02□□□□□ -1.93
VPS53Q5VIR6 AC092268.1-201ENST00000342691 405 ntBASIC3.02□□□□□ -1.93
VPS53Q5VIR6 RNU5B-2P-201ENST00000363036 113 ntBASIC3.02□□□□□ -1.93
VPS53Q5VIR6 RNU6-486P-201ENST00000363116 107 ntBASIC3.02□□□□□ -1.93
VPS53Q5VIR6 RNU6-17P-201ENST00000384245 107 ntBASIC3.02□□□□□ -1.93
VPS53Q5VIR6 RNU6-18P-201ENST00000384527 107 ntBASIC3.02□□□□□ -1.93
VPS53Q5VIR6 SNORA26.3-201ENST00000391119 136 ntBASIC3.02□□□□□ -1.93
VPS53Q5VIR6 RNU6-1109P-201ENST00000391187 107 ntBASIC3.02□□□□□ -1.93
VPS53Q5VIR6 Z98742.2-201ENST00000431564 187 ntBASIC3.02□□□□□ -1.93
VPS53Q5VIR6 AC004383.1-201ENST00000438135 289 ntBASIC3.02□□□□□ -1.93
VPS53Q5VIR6 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS53Q5VIR6 ANXA2P1-201ENST00000505539 926 ntBASIC3.02□□□□□ -1.93
VPS53Q5VIR6 RNU6-635P-201ENST00000516651 102 ntBASIC3.02□□□□□ -1.93
VPS53Q5VIR6 AC131281.1-201ENST00000522984 164 ntBASIC3.02□□□□□ -1.93
VPS53Q5VIR6 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.02□□□□□ -1.93
VPS53Q5VIR6 HSPE1P4-201ENST00000550617 308 ntBASIC3.02□□□□□ -1.93
VPS53Q5VIR6 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS53Q5VIR6 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.02□□□□□ -1.93
VPS53Q5VIR6 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS53Q5VIR6 MIR3199-1-201ENST00000582434 88 ntBASIC3.02□□□□□ -1.93
VPS53Q5VIR6 MIR3149-201ENST00000584629 83 ntBASIC3.02□□□□□ -1.93
VPS53Q5VIR6 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms