Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 MTND3P16-201ENST00000452205 344 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 AC112492.4-201ENST00000456549 352 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 U8.21-201ENST00000459536 136 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 AC010531.2-201ENST00000465012 153 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 Y_RNA.675-201ENST00000516389 149 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 SNORD60.2-201ENST00000516883 86 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 SUMO2P18-201ENST00000518873 252 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 MTND2P38-201ENST00000522536 667 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 SCOCP1-201ENST00000554676 349 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 AL157687.1-201ENST00000554853 619 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 MIR3683-201ENST00000580847 82 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 MTND5P10-201ENST00000603719 1809 ntBASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 RNU6-1085P-201ENST00000363576 107 ntBASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 RNA5SP190-201ENST00000365222 118 ntBASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 SNORA29-201ENST00000384183 140 ntBASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 MIR514A2-201ENST00000385131 88 ntBASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 MIR514A3-201ENST00000385132 88 ntBASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 MTCO3P40-201ENST00000392516 676 ntBASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 MIR1323-201ENST00000408090 73 ntBASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 AL513185.2-201ENST00000425543 193 ntBASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 USP9YP28-201ENST00000435142 589 ntBASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 AC007395.1-201ENST00000451333 677 ntBASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 AC108210.2-201ENST00000503681 201 ntBASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 AC092436.3-201ENST00000511788 257 ntBASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 AC083806.3-201ENST00000614016 455 ntBASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 FER-210ENST00000628534 558 ntTSL 5 BASIC1.66□□□□□ -2.14
CCDC40Q4G0X9 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.14
CCDC40Q4G0X9 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.65□□□□□ -2.14
CCDC40Q4G0X9 AL159152.1-201ENST00000635019 2587 ntBASIC1.65□□□□□ -2.14
CCDC40Q4G0X9 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 RNU5B-2P-201ENST00000363036 113 ntBASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 RNU6-296P-201ENST00000384608 107 ntBASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 MIR320A-201ENST00000385302 82 ntBASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 CALM2P3-201ENST00000400429 449 ntBASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 AMD1P1-201ENST00000457220 922 ntBASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 SNORD53B-201ENST00000577887 78 ntBASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 MIR8074-201ENST00000615081 81 ntBASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 AC124864.2-201ENST00000624736 186 ntBASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 OR5AK4P-201ENST00000635912 903 ntBASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.65□□□□□ -2.15
CCDC40Q4G0X9 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 RNU6-545P-201ENST00000362681 104 ntBASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 Y_RNA.123-201ENST00000363338 102 ntBASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 MIR517C-201ENST00000385103 95 ntBASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 EIF4E2P1-201ENST00000393781 255 ntBASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 RPL21P111-201ENST00000418453 477 ntBASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 ARL5AP1-201ENST00000418991 388 ntBASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 MRPS10P2-201ENST00000431226 381 ntBASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 AC099677.2-201ENST00000436385 175 ntBASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 SNORD13-201ENST00000459299 104 ntBASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 SNORA59B-202ENST00000578183 701 ntBASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 FAM157A-202ENST00000615155 405 ntBASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 AC073534.2-201ENST00000620377 381 ntBASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 AL359880.1-201ENST00000621879 266 ntBASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 AC068205.3-201ENST00000636385 468 ntBASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
CCDC40Q4G0X9 RNU6-562P-201ENST00000362731 107 ntBASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 RNU6-1286P-201ENST00000383871 107 ntBASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 SNORD116-2-201ENST00000384274 95 ntBASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 SNORD116-6-201ENST00000384711 96 ntBASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 RNU6-955P-201ENST00000410497 104 ntBASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 RNA5SP494-201ENST00000410653 129 ntBASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 ATP5J2P3-201ENST00000451550 258 ntBASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 AC087477.1-201ENST00000465747 340 ntBASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 AC005908.1-201ENST00000468701 347 ntBASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 FO393415.2-201ENST00000480085 343 ntBASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 AC091435.1-201ENST00000505442 584 ntBASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms