Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.75□□□□□ -2.29
SCN9AQ15858 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC0.75□□□□□ -2.29
SCN9AQ15858 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.75□□□□□ -2.29
SCN9AQ15858 AL442163.3-201ENST00000554110 156 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC0.75□□□□□ -2.29
SCN9AQ15858 AL590229.1-201ENST00000603497 542 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 RPL17P51-201ENST00000605218 238 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 AC009994.1-201ENST00000606889 253 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 AL353149.1-201ENST00000610667 244 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 AC008250.2-201ENST00000615261 205 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 AC009159.2-201ENST00000617603 606 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 AC097372.5-201ENST00000623665 376 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 AC099654.5-201ENST00000636479 350 ntBASIC0.75□□□□□ -2.29
SCN9AQ15858 AL391516.1-201ENST00000554380 2449 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 RNU6-517P-201ENST00000384362 110 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 RNU6-692P-201ENST00000384496 107 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 MIR618-201ENST00000385287 98 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AL669831.1-202ENST00000428504 417 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AL133396.1-201ENST00000432048 687 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 PRPS1P1-201ENST00000445305 876 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AL162395.1-201ENST00000457882 422 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AC116562.3-201ENST00000506136 177 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AC097473.1-201ENST00000508142 408 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AC069113.1-201ENST00000517763 267 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AC068587.5-201ENST00000528506 175 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.74□□□□□ -2.29
SCN9AQ15858 SNORA77B-201ENST00000578179 125 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AP003465.2-201ENST00000602571 373 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 TUSC7.1-201ENST00000610969 165 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AC068787.1-201ENST00000623908 691 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AC010615.1-201ENST00000594254 1764 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 SNORA63D-201ENST00000364359 132 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 RNU6-533P-201ENST00000384144 107 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 SNORA29-201ENST00000384183 140 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 MIR625-201ENST00000385047 85 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 COX6CP10-201ENST00000416832 224 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.74□□□□□ -2.29
SCN9AQ15858 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.74□□□□□ -2.29
SCN9AQ15858 AC073614.1-201ENST00000438690 650 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC0.74□□□□□ -2.29
SCN9AQ15858 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC0.74□□□□□ -2.29
SCN9AQ15858 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC0.74□□□□□ -2.29
SCN9AQ15858 AC099513.1-201ENST00000490423 301 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AC010486.2-201ENST00000505572 483 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 EIF4A1P12-201ENST00000551910 141 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AC103996.1-201ENST00000555468 102 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AC078795.3-201ENST00000602913 472 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AC090578.1-201ENST00000604955 591 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AC243829.6-201ENST00000612652 106 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 AC027335.2-201ENST00000624030 375 ntBASIC0.74□□□□□ -2.29
SCN9AQ15858 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.74□□□□□ -2.29
SCN9AQ15858 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
SCN9AQ15858 SNORD32B-201ENST00000364460 84 ntBASIC0.73□□□□□ -2.29
SCN9AQ15858 RNU6-393P-201ENST00000384475 107 ntBASIC0.73□□□□□ -2.29
SCN9AQ15858 SNORA12.2-201ENST00000391040 156 ntBASIC0.73□□□□□ -2.29
SCN9AQ15858 AC060773.1-201ENST00000421698 310 ntBASIC0.73□□□□□ -2.29
SCN9AQ15858 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.73□□□□□ -2.29
SCN9AQ15858 AC245047.4-201ENST00000433189 144 ntBASIC0.73□□□□□ -2.29
SCN9AQ15858 MTND5P15-201ENST00000434246 349 ntBASIC0.73□□□□□ -2.29
SCN9AQ15858 AC099677.2-201ENST00000436385 175 ntBASIC0.73□□□□□ -2.29
SCN9AQ15858 SNORD11.1-201ENST00000459482 85 ntBASIC0.73□□□□□ -2.29
SCN9AQ15858 MTCO2P6-201ENST00000463134 685 ntBASIC0.73□□□□□ -2.29
SCN9AQ15858 AC010531.2-201ENST00000465012 153 ntBASIC0.73□□□□□ -2.29
SCN9AQ15858 AC114982.1-201ENST00000469402 321 ntBASIC0.73□□□□□ -2.29
SCN9AQ15858 PCGEM1.1-201ENST00000613431 131 ntBASIC0.73□□□□□ -2.29
SCN9AQ15858 AC063943.3-201ENST00000615562 356 ntBASIC0.73□□□□□ -2.29
SCN9AQ15858 RNA5SP347-201ENST00000362445 119 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 snoU2-30.2-201ENST00000362805 70 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 RNA5SP257-201ENST00000363023 116 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 RNU6-1187P-201ENST00000364771 110 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 RNU5E-5P-201ENST00000365379 116 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 MIR1283-1-201ENST00000408494 87 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 MIR1197-201ENST00000408818 88 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC0.72□□□□□ -2.29
SCN9AQ15858 AC009961.2-201ENST00000435771 251 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 GTF2IP13-201ENST00000438487 386 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.72□□□□□ -2.29
SCN9AQ15858 RNU7-182P-201ENST00000459009 62 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 SNRPGP7-201ENST00000469016 106 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 AC011406.1-201ENST00000512440 370 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 LRRC34P2-201ENST00000514850 553 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 SNORD60.2-201ENST00000516883 86 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 MRPS36P3-201ENST00000519284 130 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 MTND2P32-201ENST00000521584 1038 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 AL512310.8-201ENST00000550183 120 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.72□□□□□ -2.29
SCN9AQ15858 AC243829.3-201ENST00000622177 108 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 AC007671.2-201ENST00000637344 619 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 RNA5SP457-201ENST00000363657 124 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 MIR513B-201ENST00000385136 84 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 RNU4-46P-201ENST00000410818 138 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 MTCO3P29-201ENST00000432119 779 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC0.72□□□□□ -2.29
SCN9AQ15858 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.72□□□□□ -2.29
SCN9AQ15858 RPS27AP8-201ENST00000452665 445 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 RPS26P45-201ENST00000471748 340 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 RNU6-1178P-201ENST00000516674 107 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC0.72□□□□□ -2.29
SCN9AQ15858 AC090115.3-201ENST00000553218 849 ntBASIC0.72□□□□□ -2.29
SCN9AQ15858 AC002400.1-201ENST00000569310 726 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms