Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 SNORD79.1-201ENST00000516069 84 ntBASIC0.34□□□□□ -2.36
CHD3Q12873 RNA5SP481-201ENST00000516814 122 ntBASIC0.34□□□□□ -2.36
CHD3Q12873 AC013828.2-201ENST00000532487 235 ntBASIC0.34□□□□□ -2.36
CHD3Q12873 AC018659.1-201ENST00000551083 169 ntBASIC0.34□□□□□ -2.36
CHD3Q12873 AL357312.1-201ENST00000603879 298 ntBASIC0.34□□□□□ -2.36
CHD3Q12873 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC0.34□□□□□ -2.36
CHD3Q12873 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
CHD3Q12873 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC0.33□□□□□ -2.36
CHD3Q12873 RNU6-960P-201ENST00000364056 120 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 MIR10B-201ENST00000385011 110 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 MIR548B-201ENST00000385247 97 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 HIGD1AP15-201ENST00000416198 280 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 AL117351.1-201ENST00000438864 766 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 AC004854.1-201ENST00000440356 349 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC0.33□□□□□ -2.36
CHD3Q12873 AC006026.2-201ENST00000457376 180 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 RNU7-94P-201ENST00000459576 63 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 AP000797.1-201ENST00000478870 387 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 MIR3664-201ENST00000579074 99 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 AC078795.3-201ENST00000602913 472 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
CHD3Q12873 RNU6-1123P-201ENST00000362347 106 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 Y_RNA.110-201ENST00000363220 99 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 SNORD18A-201ENST00000363753 72 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 SNORA4.2-201ENST00000365313 147 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 Y_RNA.465-201ENST00000384293 102 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 RNU2-72P-201ENST00000411175 163 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC0.33□□□□□ -2.36
CHD3Q12873 MTND1P32-201ENST00000433043 938 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 SNRPEP8-201ENST00000442866 260 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC0.33□□□□□ -2.36
CHD3Q12873 AL122001.1-201ENST00000457027 370 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.33□□□□□ -2.36
CHD3Q12873 AP002001.1-203ENST00000534002 267 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.33□□□□□ -2.36
CHD3Q12873 SEPT14P17-201ENST00000617978 177 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.33□□□□□ -2.36
CHD3Q12873 MTND4P5-201ENST00000435821 1374 ntBASIC0.33□□□□□ -2.36
CHD3Q12873 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.32□□□□□ -2.36
CHD3Q12873 Y_RNA.303-201ENST00000364998 94 ntBASIC0.32□□□□□ -2.36
CHD3Q12873 SNORA2A-201ENST00000383885 135 ntBASIC0.32□□□□□ -2.36
CHD3Q12873 RNU6-906P-201ENST00000384700 70 ntBASIC0.32□□□□□ -2.36
CHD3Q12873 AC245047.3-201ENST00000429428 127 ntBASIC0.32□□□□□ -2.36
CHD3Q12873 AC002486.1-201ENST00000435098 391 ntBASIC0.32□□□□□ -2.36
CHD3Q12873 HMGN2P34-201ENST00000437647 269 ntBASIC0.32□□□□□ -2.36
CHD3Q12873 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC0.32□□□□□ -2.36
CHD3Q12873 HMGN1P12-201ENST00000499125 195 ntBASIC0.32□□□□□ -2.36
CHD3Q12873 PDCD5P2-201ENST00000507570 312 ntBASIC0.32□□□□□ -2.36
CHD3Q12873 MTND3P25-201ENST00000509243 135 ntBASIC0.32□□□□□ -2.36
CHD3Q12873 RNU6-1003P-201ENST00000517099 105 ntBASIC0.32□□□□□ -2.36
CHD3Q12873 EIF4A1P12-201ENST00000551910 141 ntBASIC0.32□□□□□ -2.36
CHD3Q12873 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.32□□□□□ -2.36
CHD3Q12873 AC100812.1-201ENST00000607622 580 ntBASIC0.32□□□□□ -2.36
CHD3Q12873 Y_RNA.167-201ENST00000363735 109 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 MIR578-201ENST00000384828 96 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 MIR891A-201ENST00000401237 79 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 MIR1265-201ENST00000408444 86 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.31□□□□□ -2.36
CHD3Q12873 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC0.31□□□□□ -2.36
CHD3Q12873 AC114491.1-201ENST00000416095 246 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.31□□□□□ -2.36
CHD3Q12873 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.31□□□□□ -2.36
CHD3Q12873 MTCYBP39-201ENST00000437562 491 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 RPL39P39-201ENST00000455840 151 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.31□□□□□ -2.36
CHD3Q12873 SNORD124-201ENST00000459577 104 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 TRBVB-201ENST00000477100 408 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC0.31□□□□□ -2.36
CHD3Q12873 AC105185.1-201ENST00000518705 535 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 AC115990.1-201ENST00000526957 301 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 PCMTD1P2-201ENST00000565017 355 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 MIR4636-201ENST00000582271 80 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 MIR5006-201ENST00000583027 110 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 AL158032.1-201ENST00000605401 106 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 AC013244.3-201ENST00000605614 388 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 AC097372.5-201ENST00000623665 376 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 U3.8-201ENST00000363675 217 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 RNU6-621P-201ENST00000364752 109 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 Y_RNA.476-201ENST00000384347 108 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 RNU6-417P-201ENST00000384712 107 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 AL031577.2-201ENST00000404133 280 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 AC078809.1-201ENST00000427601 140 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 AC092423.1-201ENST00000430165 186 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 AL606489.2-201ENST00000433886 234 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC0.31□□□□□ -2.36
CHD3Q12873 AC112206.4-201ENST00000515142 405 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 RNU6-1069P-201ENST00000516612 133 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC0.31□□□□□ -2.36
CHD3Q12873 AC012557.2-201ENST00000605919 418 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 AL139286.2-201ENST00000606838 396 ntBASIC0.31□□□□□ -2.36
CHD3Q12873 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC0.31□□□□□ -2.36
CHD3Q12873 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC0.31□□□□□ -2.36
CHD3Q12873 AC134026.1-201ENST00000623249 2239 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 SNORD114-24-201ENST00000365029 72 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 MIR1185-1-201ENST00000408598 86 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 TXNL1P1-201ENST00000429528 554 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 AC073910.1-201ENST00000445047 438 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 RNU7-90P-201ENST00000459216 62 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 AC002350.1-201ENST00000490759 375 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 123.8 ms