Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 Y_RNA.551-201ENST00000384661 102 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 SNORA16.2-201ENST00000390991 127 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 U3.29-201ENST00000391296 212 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 RN7SKP101-201ENST00000411376 320 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 BX682237.1-201ENST00000415016 335 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 USMG5P1-201ENST00000425964 177 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC1.83□□□□□ -2.12
COL4A4P53420 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.83□□□□□ -2.12
COL4A4P53420 MTND5P15-201ENST00000434246 349 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 HMGB3P17-201ENST00000504195 649 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 AC009901.1-201ENST00000506703 541 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 SNORA25.11-201ENST00000515935 105 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 Y_RNA.668-201ENST00000516233 93 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 RNU4-77P-201ENST00000516692 156 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 Y_RNA.715-201ENST00000517082 110 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 RNU4-60P-201ENST00000517239 135 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 RNA5SP108-201ENST00000605921 117 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 MIR6864-201ENST00000617935 70 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.83□□□□□ -2.12
COL4A4P53420 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
COL4A4P53420 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC1.83□□□□□ -2.12
COL4A4P53420 Y_RNA.64-201ENST00000362845 102 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 RNU6-770P-201ENST00000363929 105 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 Y_RNA.327-201ENST00000365201 102 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 SNORD51-201ENST00000384320 80 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 MIR153-1-201ENST00000384914 90 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 MIR517A-201ENST00000385001 87 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 MIR548I2-201ENST00000408348 149 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 RNU6-174P-201ENST00000410406 106 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC1.83□□□□□ -2.12
COL4A4P53420 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC1.83□□□□□ -2.12
COL4A4P53420 AC243428.1-201ENST00000421099 264 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 AL590632.1-201ENST00000424289 371 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.83□□□□□ -2.12
COL4A4P53420 PSMA2P3-201ENST00000429685 675 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 HMGN1P33-201ENST00000432945 451 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC1.83□□□□□ -2.12
COL4A4P53420 AC099799.1-201ENST00000439809 192 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 RNU7-187P-201ENST00000458985 68 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 RNU7-167P-201ENST00000459160 62 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 AC010631.1-201ENST00000474150 156 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 AC093852.1-201ENST00000503587 266 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 MTND1P19-201ENST00000511780 315 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 RNA5SP61-201ENST00000516453 100 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 RNU6-911P-201ENST00000516523 104 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.83□□□□□ -2.12
COL4A4P53420 IGKV2D-36-201ENST00000518643 226 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 AL512605.2-201ENST00000592972 256 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 MIR6895-201ENST00000613497 78 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 MIR3199-2-201ENST00000636243 86 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
COL4A4P53420 AL137003.2-201ENST00000606924 2538 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
COL4A4P53420 RNU6-874P-201ENST00000362390 105 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 Y_RNA.210-201ENST00000364161 110 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 RNU6-596P-201ENST00000365395 98 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 SNORD114-22-201ENST00000365423 72 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 RNU6-637P-201ENST00000384050 107 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 Y_RNA.552-201ENST00000384665 112 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 AL109755.1-201ENST00000401791 649 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 RNU2-37P-201ENST00000410695 177 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 UBE2V1P4-201ENST00000425374 344 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.82□□□□□ -2.12
COL4A4P53420 AC093106.2-201ENST00000428212 385 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 HMGB1P27-201ENST00000431429 603 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 OR2AQ1P-201ENST00000451972 200 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 RNU6-1132P-201ENST00000459214 107 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 RPL21P39-201ENST00000463605 483 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC1.82□□□□□ -2.12
COL4A4P53420 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC1.82□□□□□ -2.12
COL4A4P53420 AC026801.1-201ENST00000497178 464 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.82□□□□□ -2.12
COL4A4P53420 HMGB1P35-201ENST00000503360 598 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 AC022493.2-201ENST00000506122 481 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 RNU6-685P-201ENST00000517088 95 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 AC011604.1-201ENST00000545978 196 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 AC104581.2-201ENST00000572227 430 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC1.82□□□□□ -2.12
COL4A4P53420 Z98751.3-201ENST00000604447 521 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 RMST_6.1-201ENST00000611980 203 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 AC078938.1-201ENST00000620993 318 ntBASIC1.82□□□□□ -2.12
COL4A4P53420 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
COL4A4P53420 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
COL4A4P53420 RNU4-13P-201ENST00000364019 141 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 RNA5SP189-201ENST00000364920 115 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 RNU6-356P-201ENST00000384140 107 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 RNA5SP219-201ENST00000390940 113 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 MIR1252-201ENST00000408861 65 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 RNU6-293P-201ENST00000411259 106 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 UBE2FP1-201ENST00000416536 447 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 AL590135.1-201ENST00000422215 156 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.81□□□□□ -2.12
COL4A4P53420 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.81□□□□□ -2.12
COL4A4P53420 PCMTD1P1-201ENST00000455560 355 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 RPL31P60-201ENST00000478450 367 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC1.81□□□□□ -2.12
COL4A4P53420 MTCO3P44-201ENST00000510977 541 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 RNU6-475P-201ENST00000516073 104 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 124.8 ms