Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC015922.2-201ENST00000435593 184 ntBASIC1.51□□□□□ -2.17
MSH6P52701 HSPE1P21-201ENST00000438283 308 ntBASIC1.51□□□□□ -2.17
MSH6P52701 MTCO1P19-201ENST00000443487 500 ntBASIC1.51□□□□□ -2.17
MSH6P52701 AC073415.1-201ENST00000449240 153 ntBASIC1.51□□□□□ -2.17
MSH6P52701 AC027575.1-201ENST00000481064 460 ntBASIC1.51□□□□□ -2.17
MSH6P52701 AL163973.1-201ENST00000484753 577 ntBASIC1.51□□□□□ -2.17
MSH6P52701 AC145146.1-201ENST00000496370 254 ntBASIC1.51□□□□□ -2.17
MSH6P52701 RNU6-970P-201ENST00000516312 107 ntBASIC1.51□□□□□ -2.17
MSH6P52701 AC069113.1-201ENST00000517763 267 ntBASIC1.51□□□□□ -2.17
MSH6P52701 AC026407.1-201ENST00000518369 204 ntBASIC1.51□□□□□ -2.17
MSH6P52701 AC087683.1-201ENST00000591187 441 ntBASIC1.51□□□□□ -2.17
MSH6P52701 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.51□□□□□ -2.17
MSH6P52701 AC107304.1-201ENST00000604229 296 ntBASIC1.51□□□□□ -2.17
MSH6P52701 AP000654.2-201ENST00000605633 586 ntBASIC1.51□□□□□ -2.17
MSH6P52701 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.5□□□□□ -2.17
MSH6P52701 RNU6-1158P-201ENST00000391167 107 ntBASIC1.5□□□□□ -2.17
MSH6P52701 AF228730.1-201ENST00000397972 663 ntBASIC1.5□□□□□ -2.17
MSH6P52701 MTCYBP2-201ENST00000407745 171 ntBASIC1.5□□□□□ -2.17
MSH6P52701 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.5□□□□□ -2.17
MSH6P52701 CDK8P2-201ENST00000415020 547 ntBASIC1.5□□□□□ -2.17
MSH6P52701 EIF4EP2-201ENST00000422816 654 ntBASIC1.5□□□□□ -2.17
MSH6P52701 UBE2V1P4-201ENST00000425374 344 ntBASIC1.5□□□□□ -2.17
MSH6P52701 AC098826.2-201ENST00000452011 651 ntBASIC1.5□□□□□ -2.17
MSH6P52701 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.5□□□□□ -2.17
MSH6P52701 RNU7-63P-201ENST00000459054 62 ntBASIC1.5□□□□□ -2.17
MSH6P52701 SNRPGP7-201ENST00000469016 106 ntBASIC1.5□□□□□ -2.17
MSH6P52701 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.5□□□□□ -2.17
MSH6P52701 AC010486.3-201ENST00000511602 785 ntBASIC1.5□□□□□ -2.17
MSH6P52701 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.5□□□□□ -2.17
MSH6P52701 AC022254.1-201ENST00000567857 235 ntBASIC1.5□□□□□ -2.17
MSH6P52701 MIR5583-1-201ENST00000580941 59 ntBASIC1.5□□□□□ -2.17
MSH6P52701 AC073648.5-201ENST00000603502 305 ntBASIC1.5□□□□□ -2.17
MSH6P52701 U2.17-201ENST00000611454 95 ntBASIC1.5□□□□□ -2.17
MSH6P52701 U1.36-201ENST00000620684 176 ntBASIC1.5□□□□□ -2.17
MSH6P52701 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
MSH6P52701 RNU6-26P-201ENST00000383985 107 ntBASIC1.49□□□□□ -2.17
MSH6P52701 MIR597-201ENST00000384968 97 ntBASIC1.49□□□□□ -2.17
MSH6P52701 SNORA26.3-201ENST00000391119 136 ntBASIC1.49□□□□□ -2.17
MSH6P52701 SNORA12-201ENST00000391162 147 ntBASIC1.49□□□□□ -2.17
MSH6P52701 RNA5SP501-201ENST00000410990 112 ntBASIC1.49□□□□□ -2.17
MSH6P52701 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.49□□□□□ -2.17
MSH6P52701 AL353193.1-201ENST00000421444 268 ntBASIC1.49□□□□□ -2.17
MSH6P52701 AL590135.1-201ENST00000422215 156 ntBASIC1.49□□□□□ -2.17
MSH6P52701 AC019205.3-201ENST00000424573 156 ntBASIC1.49□□□□□ -2.17
MSH6P52701 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC1.49□□□□□ -2.17
MSH6P52701 AC073464.1-201ENST00000429823 534 ntBASIC1.49□□□□□ -2.17
MSH6P52701 AC002486.1-201ENST00000435098 391 ntBASIC1.49□□□□□ -2.17
MSH6P52701 AC016700.2-201ENST00000446011 156 ntBASIC1.49□□□□□ -2.17
MSH6P52701 AL031274.1-201ENST00000450334 232 ntBASIC1.49□□□□□ -2.17
MSH6P52701 AC015911.1-201ENST00000495111 156 ntBASIC1.49□□□□□ -2.17
MSH6P52701 HMGB1P29-201ENST00000505659 499 ntBASIC1.49□□□□□ -2.17
MSH6P52701 AK3P2-201ENST00000507976 429 ntBASIC1.49□□□□□ -2.17
MSH6P52701 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC1.49□□□□□ -2.17
MSH6P52701 RN7SKP298-201ENST00000515950 94 ntBASIC1.49□□□□□ -2.17
MSH6P52701 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.49□□□□□ -2.17
MSH6P52701 MTND4P7-201ENST00000523876 130 ntBASIC1.49□□□□□ -2.17
MSH6P52701 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.49□□□□□ -2.17
MSH6P52701 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.49□□□□□ -2.17
MSH6P52701 AC090115.3-201ENST00000553218 849 ntBASIC1.49□□□□□ -2.17
MSH6P52701 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC1.49□□□□□ -2.17
MSH6P52701 MIR4424-201ENST00000585257 86 ntBASIC1.49□□□□□ -2.17
MSH6P52701 BNIP3P25-201ENST00000596023 559 ntBASIC1.49□□□□□ -2.17
MSH6P52701 AL354950.2-201ENST00000617939 290 ntBASIC1.49□□□□□ -2.17
MSH6P52701 AL450472.1-202ENST00000637286 180 ntBASIC1.49□□□□□ -2.17
MSH6P52701 SNORD114-6-201ENST00000364393 72 ntBASIC1.48□□□□□ -2.17
MSH6P52701 Y_RNA.332-201ENST00000365271 113 ntBASIC1.48□□□□□ -2.17
MSH6P52701 MIR193B-201ENST00000384907 83 ntBASIC1.48□□□□□ -2.17
MSH6P52701 RNA5SP201-201ENST00000410316 124 ntBASIC1.48□□□□□ -2.17
MSH6P52701 MTCO3P46-201ENST00000425787 232 ntBASIC1.48□□□□□ -2.17
MSH6P52701 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.48□□□□□ -2.17
MSH6P52701 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.48□□□□□ -2.17
MSH6P52701 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.48□□□□□ -2.17
MSH6P52701 MTCO2P18-201ENST00000457151 658 ntBASIC1.48□□□□□ -2.17
MSH6P52701 RPS3AP17-201ENST00000472594 777 ntBASIC1.48□□□□□ -2.17
MSH6P52701 AC010424.1-201ENST00000506336 297 ntBASIC1.48□□□□□ -2.17
MSH6P52701 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.48□□□□□ -2.17
MSH6P52701 AC079140.3-201ENST00000511111 550 ntBASIC1.48□□□□□ -2.17
MSH6P52701 AC091133.4-201ENST00000511142 308 ntBASIC1.48□□□□□ -2.17
MSH6P52701 Y_RNA.688-201ENST00000516565 95 ntBASIC1.48□□□□□ -2.17
MSH6P52701 RNA5SP384-201ENST00000516615 116 ntBASIC1.48□□□□□ -2.17
MSH6P52701 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.48□□□□□ -2.17
MSH6P52701 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.48□□□□□ -2.17
MSH6P52701 MIR3923-201ENST00000579521 83 ntBASIC1.48□□□□□ -2.17
MSH6P52701 AC110760.3-201ENST00000598794 467 ntBASIC1.48□□□□□ -2.17
MSH6P52701 AP001836.1-201ENST00000604675 523 ntBASIC1.48□□□□□ -2.17
MSH6P52701 RNU6-85P-201ENST00000605989 107 ntBASIC1.48□□□□□ -2.17
MSH6P52701 AC007684.1-201ENST00000609671 477 ntBASIC1.48□□□□□ -2.17
MSH6P52701 HULC.1-201ENST00000612720 240 ntBASIC1.48□□□□□ -2.17
MSH6P52701 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.48□□□□□ -2.17
MSH6P52701 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
MSH6P52701 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
MSH6P52701 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
MSH6P52701 AC092268.1-201ENST00000342691 405 ntBASIC1.47□□□□□ -2.17
MSH6P52701 RNA5SP457-201ENST00000363657 124 ntBASIC1.47□□□□□ -2.17
MSH6P52701 RNA5SP493-201ENST00000364115 91 ntBASIC1.47□□□□□ -2.17
MSH6P52701 Y_RNA.255-201ENST00000364581 97 ntBASIC1.47□□□□□ -2.17
MSH6P52701 AL357139.1-201ENST00000407792 426 ntBASIC1.47□□□□□ -2.17
MSH6P52701 VN1R36P-201ENST00000414936 291 ntBASIC1.47□□□□□ -2.17
MSH6P52701 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.47□□□□□ -2.17
MSH6P52701 AC108078.1-201ENST00000508073 725 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms