Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNU1-117P-201ENST00000517041 158 ntBASIC3.7□□□□□ -1.82
LIG3P49916 HSPE1P18-201ENST00000517602 280 ntBASIC3.7□□□□□ -1.82
LIG3P49916 AC026403.1-201ENST00000518938 295 ntBASIC3.7□□□□□ -1.82
LIG3P49916 AP005660.1-201ENST00000522972 293 ntBASIC3.7□□□□□ -1.82
LIG3P49916 DEFB131C-201ENST00000528817 165 ntBASIC3.7□□□□□ -1.82
LIG3P49916 AC087441.2-201ENST00000529141 262 ntBASIC3.7□□□□□ -1.82
LIG3P49916 MIR4444-1-201ENST00000581696 74 ntBASIC3.7□□□□□ -1.82
LIG3P49916 MIR4444-2-201ENST00000584390 74 ntBASIC3.7□□□□□ -1.82
LIG3P49916 AC005828.6-201ENST00000606610 232 ntBASIC3.7□□□□□ -1.82
LIG3P49916 MIR92B-201ENST00000607575 96 ntBASIC3.7□□□□□ -1.82
LIG3P49916 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.7□□□□□ -1.82
LIG3P49916 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.7□□□□□ -1.82
LIG3P49916 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
LIG3P49916 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.69□□□□□ -1.82
LIG3P49916 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
LIG3P49916 COX6CP10-201ENST00000416832 224 ntBASIC3.69□□□□□ -1.82
LIG3P49916 AC006989.1-201ENST00000427212 131 ntBASIC3.69□□□□□ -1.82
LIG3P49916 AC092185.1-201ENST00000491371 97 ntBASIC3.69□□□□□ -1.82
LIG3P49916 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.69□□□□□ -1.82
LIG3P49916 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.69□□□□□ -1.82
LIG3P49916 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.69□□□□□ -1.82
LIG3P49916 AC104619.4-201ENST00000510773 249 ntBASIC3.69□□□□□ -1.82
LIG3P49916 RNU2-44P-201ENST00000516795 194 ntBASIC3.69□□□□□ -1.82
LIG3P49916 DEFB117-201ENST00000602356 141 ntBASIC3.69□□□□□ -1.82
LIG3P49916 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.69□□□□□ -1.82
LIG3P49916 SNORA51-201ENST00000606420 132 ntBASIC3.69□□□□□ -1.82
LIG3P49916 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
LIG3P49916 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
LIG3P49916 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
LIG3P49916 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
LIG3P49916 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.68□□□□□ -1.82
LIG3P49916 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
LIG3P49916 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
LIG3P49916 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.68□□□□□ -1.82
LIG3P49916 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
LIG3P49916 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.68□□□□□ -1.82
LIG3P49916 MIR148B-201ENST00000362252 99 ntBASIC3.68□□□□□ -1.82
LIG3P49916 RNU6-682P-201ENST00000363843 106 ntBASIC3.68□□□□□ -1.82
LIG3P49916 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.68□□□□□ -1.82
LIG3P49916 SNORD87-201ENST00000364849 89 ntBASIC3.68□□□□□ -1.82
LIG3P49916 EIF4EP4-201ENST00000424916 578 ntBASIC3.68□□□□□ -1.82
LIG3P49916 AC024067.1-201ENST00000426199 223 ntBASIC3.68□□□□□ -1.82
LIG3P49916 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.68□□□□□ -1.82
LIG3P49916 AL358232.1-201ENST00000448030 501 ntBASIC3.68□□□□□ -1.82
LIG3P49916 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.68□□□□□ -1.82
LIG3P49916 RNU2-12P-201ENST00000517216 168 ntBASIC3.68□□□□□ -1.82
LIG3P49916 AC074050.1-201ENST00000563247 211 ntBASIC3.68□□□□□ -1.82
LIG3P49916 MIR4765-201ENST00000585007 77 ntBASIC3.68□□□□□ -1.82
LIG3P49916 AP000553.6-201ENST00000641242 118 ntBASIC3.68□□□□□ -1.82
LIG3P49916 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
LIG3P49916 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.68□□□□□ -1.82
LIG3P49916 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
LIG3P49916 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
LIG3P49916 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
LIG3P49916 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
LIG3P49916 GABRG2-229ENST00000641017 3628 ntBASIC3.67□□□□□ -1.82
LIG3P49916 RNU6-47P-201ENST00000383866 107 ntBASIC3.67□□□□□ -1.82
LIG3P49916 MIR449B-201ENST00000384995 97 ntBASIC3.67□□□□□ -1.82
LIG3P49916 RNA5SP171-201ENST00000391071 115 ntBASIC3.67□□□□□ -1.82
LIG3P49916 ATP5A1P2-201ENST00000412323 255 ntBASIC3.67□□□□□ -1.82
LIG3P49916 AC109925.1-201ENST00000478069 331 ntBASIC3.67□□□□□ -1.82
LIG3P49916 RNA5SP112-201ENST00000515937 99 ntBASIC3.67□□□□□ -1.82
LIG3P49916 RN7SKP18-201ENST00000516005 275 ntBASIC3.67□□□□□ -1.82
LIG3P49916 RNU6-861P-201ENST00000516745 106 ntBASIC3.67□□□□□ -1.82
LIG3P49916 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.67□□□□□ -1.82
LIG3P49916 AC103810.1-201ENST00000579873 453 ntBASIC3.67□□□□□ -1.82
LIG3P49916 AC008739.2-201ENST00000597006 317 ntBASIC3.67□□□□□ -1.82
LIG3P49916 RPL17P51-201ENST00000605218 238 ntBASIC3.67□□□□□ -1.82
LIG3P49916 XIST_intron.1-201ENST00000619444 68 ntBASIC3.67□□□□□ -1.82
LIG3P49916 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
LIG3P49916 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
LIG3P49916 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.66□□□□□ -1.82
LIG3P49916 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.66□□□□□ -1.82
LIG3P49916 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
LIG3P49916 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.66□□□□□ -1.82
LIG3P49916 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.66□□□□□ -1.82
LIG3P49916 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.66□□□□□ -1.82
LIG3P49916 SNORA71.3-201ENST00000362582 128 ntBASIC3.66□□□□□ -1.82
LIG3P49916 RNU6-324P-201ENST00000363957 106 ntBASIC3.66□□□□□ -1.82
LIG3P49916 RNU6-1083P-201ENST00000384022 107 ntBASIC3.66□□□□□ -1.82
LIG3P49916 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.66□□□□□ -1.82
LIG3P49916 TOMM22P2-201ENST00000430735 237 ntBASIC3.66□□□□□ -1.82
LIG3P49916 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
LIG3P49916 AC106707.2-201ENST00000484182 374 ntBASIC3.66□□□□□ -1.82
LIG3P49916 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.66□□□□□ -1.82
LIG3P49916 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC3.66□□□□□ -1.82
LIG3P49916 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
LIG3P49916 SNORD59.2-201ENST00000516873 68 ntBASIC3.66□□□□□ -1.82
LIG3P49916 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.66□□□□□ -1.82
LIG3P49916 AC009093.8-201ENST00000641769 292 ntBASIC3.66□□□□□ -1.82
LIG3P49916 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
LIG3P49916 AC091152.2-201ENST00000591628 2569 ntBASIC3.66□□□□□ -1.82
LIG3P49916 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
LIG3P49916 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
LIG3P49916 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
LIG3P49916 RNA5SP42-201ENST00000364278 115 ntBASIC3.65□□□□□ -1.83
LIG3P49916 RNU6-454P-201ENST00000364292 107 ntBASIC3.65□□□□□ -1.83
LIG3P49916 Y_RNA.262-201ENST00000364641 102 ntBASIC3.65□□□□□ -1.83
LIG3P49916 Y_RNA.329-201ENST00000365209 107 ntBASIC3.65□□□□□ -1.83
LIG3P49916 MIR29B2-201ENST00000385055 81 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms