Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
SOX3P41225 Y_RNA.2-201ENST00000362330 96 ntBASIC2.01□□□□□ -2.09
SOX3P41225 SNORD32B-201ENST00000364460 84 ntBASIC2.01□□□□□ -2.09
SOX3P41225 Y_RNA.356-201ENST00000365475 113 ntBASIC2.01□□□□□ -2.09
SOX3P41225 Y_RNA.404-201ENST00000383978 102 ntBASIC2.01□□□□□ -2.09
SOX3P41225 RNU6-378P-201ENST00000384324 107 ntBASIC2.01□□□□□ -2.09
SOX3P41225 Y_RNA.533-201ENST00000384596 114 ntBASIC2.01□□□□□ -2.09
SOX3P41225 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
SOX3P41225 MIR1261-201ENST00000408659 82 ntBASIC2.01□□□□□ -2.09
SOX3P41225 SNORA11.4-201ENST00000408823 129 ntBASIC2.01□□□□□ -2.09
SOX3P41225 RNA5SP494-201ENST00000410653 129 ntBASIC2.01□□□□□ -2.09
SOX3P41225 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.01□□□□□ -2.09
SOX3P41225 AC243428.1-201ENST00000421099 264 ntBASIC2.01□□□□□ -2.09
SOX3P41225 CBX3P6-201ENST00000430257 527 ntBASIC2.01□□□□□ -2.09
SOX3P41225 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.01□□□□□ -2.09
SOX3P41225 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.01□□□□□ -2.09
SOX3P41225 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.01□□□□□ -2.09
SOX3P41225 RNA5SP200-201ENST00000516360 103 ntBASIC2.01□□□□□ -2.09
SOX3P41225 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.01□□□□□ -2.09
SOX3P41225 AC093027.1-201ENST00000546698 429 ntBASIC2.01□□□□□ -2.09
SOX3P41225 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.01□□□□□ -2.09
SOX3P41225 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.01□□□□□ -2.09
SOX3P41225 MIR5690-201ENST00000583739 73 ntBASIC2.01□□□□□ -2.09
SOX3P41225 AL158827.2-201ENST00000602494 330 ntBASIC2.01□□□□□ -2.09
SOX3P41225 C8orf59P2-201ENST00000603441 271 ntBASIC2.01□□□□□ -2.09
SOX3P41225 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.01□□□□□ -2.09
SOX3P41225 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.01□□□□□ -2.09
SOX3P41225 PISRT1.1-201ENST00000616930 107 ntBASIC2.01□□□□□ -2.09
SOX3P41225 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.01□□□□□ -2.09
SOX3P41225 SCARNA4-201ENST00000629045 128 ntBASIC2.01□□□□□ -2.09
SOX3P41225 AL691447.3-201ENST00000635020 330 ntBASIC2.01□□□□□ -2.09
SOX3P41225 MIR1302-1-201ENST00000637932 143 ntBASIC2.01□□□□□ -2.09
SOX3P41225 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
SOX3P41225 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
SOX3P41225 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2□□□□□ -2.09
SOX3P41225 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2□□□□□ -2.09
SOX3P41225 RNU1-23P-201ENST00000363361 144 ntBASIC2□□□□□ -2.09
SOX3P41225 RNU6-1188P-201ENST00000363795 107 ntBASIC2□□□□□ -2.09
SOX3P41225 U3.9-201ENST00000363823 204 ntBASIC2□□□□□ -2.09
SOX3P41225 RNU6-595P-201ENST00000363944 107 ntBASIC2□□□□□ -2.09
SOX3P41225 RNU4-9P-201ENST00000364951 139 ntBASIC2□□□□□ -2.09
SOX3P41225 Y_RNA.384-201ENST00000383909 102 ntBASIC2□□□□□ -2.09
SOX3P41225 MT-TD-201ENST00000387419 68 ntBASIC2□□□□□ -2.09
SOX3P41225 SNORA46.1-201ENST00000391069 153 ntBASIC2□□□□□ -2.09
SOX3P41225 RNU6-370P-201ENST00000411008 104 ntBASIC2□□□□□ -2.09
SOX3P41225 RNU6-1304P-201ENST00000411374 106 ntBASIC2□□□□□ -2.09
SOX3P41225 RPS26P42-201ENST00000413485 326 ntBASIC2□□□□□ -2.09
SOX3P41225 AL358453.1-201ENST00000422522 250 ntBASIC2□□□□□ -2.09
SOX3P41225 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2□□□□□ -2.09
SOX3P41225 RPL23AP7-203ENST00000449021 469 ntBASIC2□□□□□ -2.09
SOX3P41225 AC011753.1-201ENST00000451001 220 ntBASIC2□□□□□ -2.09
SOX3P41225 snoU13.6-201ENST00000458785 104 ntBASIC2□□□□□ -2.09
SOX3P41225 RPL7P42-201ENST00000481005 679 ntBASIC2□□□□□ -2.09
SOX3P41225 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2□□□□□ -2.09
SOX3P41225 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2□□□□□ -2.09
SOX3P41225 MTND3P22-201ENST00000510932 243 ntBASIC2□□□□□ -2.09
SOX3P41225 RNU6-559P-201ENST00000516151 98 ntBASIC2□□□□□ -2.09
SOX3P41225 RNA5SP384-201ENST00000516615 116 ntBASIC2□□□□□ -2.09
SOX3P41225 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2□□□□□ -2.09
SOX3P41225 APOOP3-201ENST00000536787 586 ntBASIC2□□□□□ -2.09
SOX3P41225 EIF4A1P12-201ENST00000551910 141 ntBASIC2□□□□□ -2.09
SOX3P41225 FRG2DP-202ENST00000566967 323 ntBASIC2□□□□□ -2.09
SOX3P41225 AL355375.2-201ENST00000574825 175 ntBASIC2□□□□□ -2.09
SOX3P41225 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2□□□□□ -2.09
SOX3P41225 AC010928.2-201ENST00000588017 287 ntBASIC2□□□□□ -2.09
SOX3P41225 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2□□□□□ -2.09
SOX3P41225 AC137590.2-201ENST00000619709 240 ntBASIC2□□□□□ -2.09
SOX3P41225 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2□□□□□ -2.09
SOX3P41225 ZNF299P-201ENST00000406845 1804 ntBASIC2□□□□□ -2.09
SOX3P41225 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2□□□□□ -2.09
SOX3P41225 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
SOX3P41225 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.99□□□□□ -2.09
SOX3P41225 RNU6-1159P-201ENST00000362933 107 ntBASIC1.99□□□□□ -2.09
SOX3P41225 RNA5SP37-201ENST00000365420 130 ntBASIC1.99□□□□□ -2.09
SOX3P41225 Y_RNA.490-201ENST00000384413 102 ntBASIC1.99□□□□□ -2.09
SOX3P41225 SNORA64-201ENST00000384674 134 ntBASIC1.99□□□□□ -2.09
SOX3P41225 MIR524-201ENST00000385242 87 ntBASIC1.99□□□□□ -2.09
SOX3P41225 RNU2-48P-201ENST00000410694 191 ntBASIC1.99□□□□□ -2.09
SOX3P41225 RN7SKP284-201ENST00000411002 343 ntBASIC1.99□□□□□ -2.09
SOX3P41225 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.99□□□□□ -2.09
SOX3P41225 USMG5P1-201ENST00000425964 177 ntBASIC1.99□□□□□ -2.09
SOX3P41225 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.99□□□□□ -2.09
SOX3P41225 OR2AQ1P-201ENST00000451972 200 ntBASIC1.99□□□□□ -2.09
SOX3P41225 AL139109.1-201ENST00000455491 297 ntBASIC1.99□□□□□ -2.09
SOX3P41225 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.99□□□□□ -2.09
SOX3P41225 AC087477.1-201ENST00000465747 340 ntBASIC1.99□□□□□ -2.09
SOX3P41225 AC018868.1-201ENST00000491307 315 ntBASIC1.99□□□□□ -2.09
SOX3P41225 SCARNA16.3-201ENST00000516595 184 ntBASIC1.99□□□□□ -2.09
SOX3P41225 CBX3P8-201ENST00000532412 525 ntBASIC1.99□□□□□ -2.09
SOX3P41225 AC005899.2-201ENST00000584353 90 ntBASIC1.99□□□□□ -2.09
SOX3P41225 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.99□□□□□ -2.09
SOX3P41225 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.99□□□□□ -2.09
SOX3P41225 AC104985.2-201ENST00000620598 500 ntBASIC1.99□□□□□ -2.09
SOX3P41225 MIR203B-201ENST00000636080 86 ntBASIC1.99□□□□□ -2.09
SOX3P41225 AL669831.3-213ENST00000636676 183 ntBASIC1.99□□□□□ -2.09
SOX3P41225 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.99□□□□□ -2.09
SOX3P41225 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
SOX3P41225 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
SOX3P41225 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.98□□□□□ -2.09
SOX3P41225 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms