Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SNORD114-24-201ENST00000365029 72 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 RNU6-715P-201ENST00000365204 103 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.55□□□□□ -2.32
HLA-DMBP28068 RNU6-550P-201ENST00000391057 101 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 RNU6-1054P-201ENST00000411293 104 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 AC117454.1-201ENST00000491120 168 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
HLA-DMBP28068 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.55□□□□□ -2.32
HLA-DMBP28068 LRRC34P2-201ENST00000514850 553 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 SNORA31.4-201ENST00000516049 129 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 RNU6-197P-201ENST00000516680 100 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC0.55□□□□□ -2.32
HLA-DMBP28068 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.55□□□□□ -2.32
HLA-DMBP28068 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.55□□□□□ -2.32
HLA-DMBP28068 AC133485.1-201ENST00000567176 124 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 AC138907.6-201ENST00000568401 126 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 MIR4509-3-201ENST00000578671 94 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 MIR4509-2-201ENST00000583920 94 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 AC021506.2-201ENST00000612354 169 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 MIR4509-1-201ENST00000618224 94 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 MIR6835-201ENST00000621552 64 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 AC099654.13-201ENST00000639774 207 ntBASIC0.55□□□□□ -2.32
HLA-DMBP28068 snoU2-30.2-201ENST00000362805 70 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 SNORA33-201ENST00000363664 130 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 RNU6-501P-201ENST00000364072 100 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 RNU6-1303P-201ENST00000364841 107 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 MIR608-201ENST00000384820 100 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 MIR122-201ENST00000385044 85 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 MIR1283-1-201ENST00000408494 87 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 AL365184.2-201ENST00000431139 435 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 MTND5P15-201ENST00000434246 349 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.54□□□□□ -2.32
HLA-DMBP28068 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC0.54□□□□□ -2.32
HLA-DMBP28068 AL606662.1-201ENST00000445763 553 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 MTCYBP1-201ENST00000454315 1119 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 TRBVA-201ENST00000498804 316 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 AC091435.1-201ENST00000505442 584 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.54□□□□□ -2.32
HLA-DMBP28068 AC091874.1-201ENST00000511402 339 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 PSMC1P5-201ENST00000512850 177 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.54□□□□□ -2.32
HLA-DMBP28068 Y_RNA.672-201ENST00000516289 104 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 RNA5SP168-201ENST00000516642 112 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 RNU6-1220P-201ENST00000517126 108 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 SUMO2P16-201ENST00000519475 264 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 NTS-203ENST00000551529 801 ntTSL 3 BASIC0.54□□□□□ -2.32
HLA-DMBP28068 PCMTD1P2-201ENST00000565017 355 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 TPRKBP2-201ENST00000565969 475 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 AL031281.1-201ENST00000604049 488 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 Z99289.3-201ENST00000605586 594 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 AC008250.2-201ENST00000615261 205 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 AC009159.2-201ENST00000617603 606 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 SNORA43.4-201ENST00000629559 138 ntBASIC0.54□□□□□ -2.32
HLA-DMBP28068 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.53□□□□□ -2.32
HLA-DMBP28068 RNU6-169P-201ENST00000365336 107 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 Y_RNA.354-201ENST00000365448 111 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 SNORA36A-201ENST00000384221 132 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 RNU6-950P-201ENST00000384651 107 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 MIR508-201ENST00000384857 115 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 RNU6-910P-201ENST00000390844 107 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 MIR208B-201ENST00000401172 77 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 RNU2-8P-201ENST00000410727 190 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.53□□□□□ -2.32
HLA-DMBP28068 AC063976.4-201ENST00000421971 163 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.53□□□□□ -2.32
HLA-DMBP28068 HMGN2P34-201ENST00000437647 269 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 AC002429.1-201ENST00000437672 148 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC0.53□□□□□ -2.32
HLA-DMBP28068 SNORD124-201ENST00000459577 104 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 MTCO2P6-201ENST00000463134 685 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.53□□□□□ -2.32
HLA-DMBP28068 AC091951.3-201ENST00000504093 246 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 PDCD5P2-201ENST00000507570 312 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 SNORA31.2-201ENST00000516019 134 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 AC136628.3-201ENST00000521868 290 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 AC024995.1-201ENST00000523014 93 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 DEFB131C-201ENST00000528817 165 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC0.53□□□□□ -2.32
HLA-DMBP28068 AL158050.2-201ENST00000605336 568 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.53□□□□□ -2.32
HLA-DMBP28068 AC011155.2-201ENST00000623202 216 ntBASIC0.53□□□□□ -2.32
HLA-DMBP28068 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.53□□□□□ -2.32
HLA-DMBP28068 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.52□□□□□ -2.33
HLA-DMBP28068 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC0.52□□□□□ -2.33
HLA-DMBP28068 RNY1P12-201ENST00000364251 105 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 Y_RNA.504-201ENST00000384481 104 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 RNU6-1235P-201ENST00000384559 107 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 RNU6-733P-201ENST00000410759 104 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 AC012306.1-201ENST00000423267 114 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 RNU6-498P-201ENST00000459468 107 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 MTCO3P7-201ENST00000510008 774 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.52□□□□□ -2.33
HLA-DMBP28068 AL590705.4-201ENST00000532209 134 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 MTND4P33-201ENST00000556706 766 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC0.52□□□□□ -2.33
HLA-DMBP28068 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 122.2 ms