Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 U6atac.2-201ENST00000408644 118 ntBASIC2.26□□□□□ -2.05
MSH3P20585 AL354751.2-201ENST00000415471 210 ntBASIC2.26□□□□□ -2.05
MSH3P20585 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.26□□□□□ -2.05
MSH3P20585 AL358453.1-201ENST00000422522 250 ntBASIC2.26□□□□□ -2.05
MSH3P20585 AL353997.1-201ENST00000432936 108 ntBASIC2.26□□□□□ -2.05
MSH3P20585 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.26□□□□□ -2.05
MSH3P20585 AC007677.1-201ENST00000445757 515 ntBASIC2.26□□□□□ -2.05
MSH3P20585 AL353705.4-201ENST00000449661 238 ntBASIC2.26□□□□□ -2.05
MSH3P20585 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.26□□□□□ -2.05
MSH3P20585 RPL30P10-201ENST00000488148 337 ntBASIC2.26□□□□□ -2.05
MSH3P20585 RPL17P19-201ENST00000489069 552 ntBASIC2.26□□□□□ -2.05
MSH3P20585 AF186996.7-201ENST00000492781 209 ntBASIC2.26□□□□□ -2.05
MSH3P20585 AC008413.1-201ENST00000511864 177 ntBASIC2.26□□□□□ -2.05
MSH3P20585 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC2.26□□□□□ -2.05
MSH3P20585 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.26□□□□□ -2.05
MSH3P20585 SUB1P3-201ENST00000564581 315 ntBASIC2.26□□□□□ -2.05
MSH3P20585 MIR4513-201ENST00000581077 86 ntBASIC2.26□□□□□ -2.05
MSH3P20585 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.26□□□□□ -2.05
MSH3P20585 MIR6766-201ENST00000622641 72 ntBASIC2.26□□□□□ -2.05
MSH3P20585 SCARNA4-201ENST00000629045 128 ntBASIC2.26□□□□□ -2.05
MSH3P20585 SNORD98-201ENST00000636377 67 ntBASIC2.26□□□□□ -2.05
MSH3P20585 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
MSH3P20585 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
MSH3P20585 RNU6-490P-201ENST00000362985 107 ntBASIC2.25□□□□□ -2.05
MSH3P20585 RNU4-9P-201ENST00000364951 139 ntBASIC2.25□□□□□ -2.05
MSH3P20585 XGY1-201ENST00000381172 446 ntBASIC2.25□□□□□ -2.05
MSH3P20585 RNU1-52P-201ENST00000384190 164 ntBASIC2.25□□□□□ -2.05
MSH3P20585 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.25□□□□□ -2.05
MSH3P20585 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.25□□□□□ -2.05
MSH3P20585 MTCO2P12-201ENST00000427426 682 ntBASIC2.25□□□□□ -2.05
MSH3P20585 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.25□□□□□ -2.05
MSH3P20585 RN7SKP210-201ENST00000459176 261 ntBASIC2.25□□□□□ -2.05
MSH3P20585 MIR2053-201ENST00000459295 91 ntBASIC2.25□□□□□ -2.05
MSH3P20585 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.25□□□□□ -2.05
MSH3P20585 AC021146.2-201ENST00000504736 556 ntBASIC2.25□□□□□ -2.05
MSH3P20585 RNU6-1153P-201ENST00000516760 105 ntBASIC2.25□□□□□ -2.05
MSH3P20585 RNU6-264P-201ENST00000517134 104 ntBASIC2.25□□□□□ -2.05
MSH3P20585 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.25□□□□□ -2.05
MSH3P20585 AC105245.1-201ENST00000581934 244 ntBASIC2.25□□□□□ -2.05
MSH3P20585 MIR4719-201ENST00000585233 84 ntBASIC2.25□□□□□ -2.05
MSH3P20585 AC010928.2-201ENST00000588017 287 ntBASIC2.25□□□□□ -2.05
MSH3P20585 RPL30P11-203ENST00000598995 310 ntBASIC2.25□□□□□ -2.05
MSH3P20585 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.25□□□□□ -2.05
MSH3P20585 Z98751.3-201ENST00000604447 521 ntBASIC2.25□□□□□ -2.05
MSH3P20585 AC069294.1-201ENST00000608397 350 ntBASIC2.25□□□□□ -2.05
MSH3P20585 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.25□□□□□ -2.05
MSH3P20585 AL449363.1-201ENST00000617815 186 ntBASIC2.25□□□□□ -2.05
MSH3P20585 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
MSH3P20585 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
MSH3P20585 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
MSH3P20585 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
MSH3P20585 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
MSH3P20585 MIR369-201ENST00000362155 70 ntBASIC2.24□□□□□ -2.05
MSH3P20585 Y_RNA.5-201ENST00000362334 102 ntBASIC2.24□□□□□ -2.05
MSH3P20585 RNU6-1115P-201ENST00000362490 106 ntBASIC2.24□□□□□ -2.05
MSH3P20585 RNU6-474P-201ENST00000384243 107 ntBASIC2.24□□□□□ -2.05
MSH3P20585 Y_RNA.463-201ENST00000384271 102 ntBASIC2.24□□□□□ -2.05
MSH3P20585 RNA5SP494-201ENST00000410653 129 ntBASIC2.24□□□□□ -2.05
MSH3P20585 AC012306.1-201ENST00000423267 114 ntBASIC2.24□□□□□ -2.05
MSH3P20585 Z82188.1-201ENST00000436709 154 ntBASIC2.24□□□□□ -2.05
MSH3P20585 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.24□□□□□ -2.05
MSH3P20585 AL353752.1-201ENST00000454946 260 ntBASIC2.24□□□□□ -2.05
MSH3P20585 AC080013.2-201ENST00000460866 323 ntBASIC2.24□□□□□ -2.05
MSH3P20585 RNU6-567P-201ENST00000516746 107 ntBASIC2.24□□□□□ -2.05
MSH3P20585 AL590705.4-201ENST00000532209 134 ntBASIC2.24□□□□□ -2.05
MSH3P20585 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.24□□□□□ -2.05
MSH3P20585 AC104581.2-201ENST00000572227 430 ntBASIC2.24□□□□□ -2.05
MSH3P20585 SNORD53-201ENST00000579969 78 ntBASIC2.24□□□□□ -2.05
MSH3P20585 AL034555.1-201ENST00000604816 211 ntBASIC2.24□□□□□ -2.05
MSH3P20585 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.24□□□□□ -2.05
MSH3P20585 uc_338.22-201ENST00000622722 187 ntBASIC2.24□□□□□ -2.05
MSH3P20585 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.24□□□□□ -2.05
MSH3P20585 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
MSH3P20585 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.24□□□□□ -2.05
MSH3P20585 Y_RNA.112-201ENST00000363250 102 ntBASIC2.23□□□□□ -2.05
MSH3P20585 RNU6-99P-201ENST00000364721 107 ntBASIC2.23□□□□□ -2.05
MSH3P20585 Y_RNA.405-201ENST00000383979 100 ntBASIC2.23□□□□□ -2.05
MSH3P20585 RNU6-1227P-201ENST00000383981 107 ntBASIC2.23□□□□□ -2.05
MSH3P20585 Y_RNA.451-201ENST00000384200 100 ntBASIC2.23□□□□□ -2.05
MSH3P20585 Y_RNA.524-201ENST00000384564 100 ntBASIC2.23□□□□□ -2.05
MSH3P20585 Y_RNA.561-201ENST00000384694 100 ntBASIC2.23□□□□□ -2.05
MSH3P20585 Y_RNA.577-201ENST00000384794 101 ntBASIC2.23□□□□□ -2.05
MSH3P20585 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.23□□□□□ -2.05
MSH3P20585 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.23□□□□□ -2.05
MSH3P20585 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.23□□□□□ -2.05
MSH3P20585 MTCYBP6-201ENST00000441810 138 ntBASIC2.23□□□□□ -2.05
MSH3P20585 AL137792.2-201ENST00000443484 235 ntBASIC2.23□□□□□ -2.05
MSH3P20585 snoU13.30-201ENST00000458951 104 ntBASIC2.23□□□□□ -2.05
MSH3P20585 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.23□□□□□ -2.05
MSH3P20585 AC087477.1-201ENST00000465747 340 ntBASIC2.23□□□□□ -2.05
MSH3P20585 AC140059.1-201ENST00000489238 361 ntBASIC2.23□□□□□ -2.05
MSH3P20585 RNU6-976P-201ENST00000516086 111 ntBASIC2.23□□□□□ -2.05
MSH3P20585 RNU6-699P-201ENST00000517081 110 ntBASIC2.23□□□□□ -2.05
MSH3P20585 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.23□□□□□ -2.05
MSH3P20585 MIR3923-201ENST00000579521 83 ntBASIC2.23□□□□□ -2.05
MSH3P20585 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.23□□□□□ -2.05
MSH3P20585 AL356055.1-201ENST00000602528 446 ntBASIC2.23□□□□□ -2.05
MSH3P20585 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.23□□□□□ -2.05
MSH3P20585 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
MSH3P20585 RNU4-15P-201ENST00000362613 141 ntBASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms