Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 RNU6-311P-201ENST00000516224 102 ntBASIC0.69□□□□□ -2.3
LIMS3P0CW19 SNORD27.1-201ENST00000516319 72 ntBASIC0.69□□□□□ -2.3
LIMS3P0CW19 AP003461.1-201ENST00000528866 78 ntBASIC0.69□□□□□ -2.3
LIMS3P0CW19 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC0.69□□□□□ -2.3
LIMS3P0CW19 AC109446.2-201ENST00000567872 497 ntBASIC0.69□□□□□ -2.3
LIMS3P0CW19 MTND1P8-201ENST00000571424 950 ntBASIC0.69□□□□□ -2.3
LIMS3P0CW19 MIR4698-201ENST00000577795 80 ntBASIC0.69□□□□□ -2.3
LIMS3P0CW19 MIR4653-201ENST00000585107 83 ntBASIC0.69□□□□□ -2.3
LIMS3P0CW19 RN7SL853P-201ENST00000617250 223 ntBASIC0.69□□□□□ -2.3
LIMS3P0CW19 AC005562.2-201ENST00000618264 111 ntBASIC0.69□□□□□ -2.3
LIMS3P0CW19 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.69□□□□□ -2.3
LIMS3P0CW19 AL391987.6-201ENST00000305671 199 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 RNU6-1029P-201ENST00000384109 107 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 RNU6-74P-201ENST00000384235 107 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 SNORD70.1-201ENST00000391007 85 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 RNA5SP109-201ENST00000391010 116 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 RNA5SP323-201ENST00000391094 133 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 AC006461.1-201ENST00000412637 326 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 UBE2D3P4-201ENST00000441973 436 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 RPS4XP11-201ENST00000446897 772 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 COX6CP14-201ENST00000469580 174 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC0.68□□□□□ -2.3
LIMS3P0CW19 PDCD5P2-201ENST00000507570 312 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC0.68□□□□□ -2.3
LIMS3P0CW19 PSMC1P5-201ENST00000512850 177 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 AC069113.1-201ENST00000517763 267 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.68□□□□□ -2.3
LIMS3P0CW19 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.68□□□□□ -2.3
LIMS3P0CW19 AC016256.1-201ENST00000547971 354 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 AC026470.2-201ENST00000561492 181 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 TPRKBP2-201ENST00000565969 475 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC0.68□□□□□ -2.3
LIMS3P0CW19 AC002044.1-201ENST00000606707 158 ntBASIC0.68□□□□□ -2.3
LIMS3P0CW19 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.68□□□□□ -2.3
LIMS3P0CW19 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC0.68□□□□□ -2.3
LIMS3P0CW19 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.67□□□□□ -2.3
LIMS3P0CW19 RNU6-266P-201ENST00000364225 107 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 RNU6-417P-201ENST00000384712 107 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 RNU6-1031P-201ENST00000384773 107 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 MIR100-201ENST00000385259 80 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 5S_rRNA.2-201ENST00000391293 112 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 RNU6-1054P-201ENST00000411293 104 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC0.67□□□□□ -2.3
LIMS3P0CW19 AC074290.1-201ENST00000448883 135 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 AC016717.1-201ENST00000448918 286 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 ZNF114P1-201ENST00000453500 292 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC0.67□□□□□ -2.3
LIMS3P0CW19 FABP5P5-201ENST00000515537 406 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 RNA5SP168-201ENST00000516642 112 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 RN7SKP49-201ENST00000516675 260 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.67□□□□□ -2.3
LIMS3P0CW19 AL391840.1-201ENST00000571144 367 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 MIR3973-201ENST00000579824 107 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 MIR3682-201ENST00000581338 84 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 MIR3941-201ENST00000582572 103 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 AL513534.2-201ENST00000603836 250 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 AC104458.1-201ENST00000608243 463 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 MIR6857-201ENST00000613267 93 ntBASIC0.67□□□□□ -2.3
LIMS3P0CW19 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.67□□□□□ -2.3
LIMS3P0CW19 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.67□□□□□ -2.3
LIMS3P0CW19 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
LIMS3P0CW19 RNU6-1097P-201ENST00000363586 107 ntBASIC0.66□□□□□ -2.3
LIMS3P0CW19 RNU6-108P-201ENST00000365558 107 ntBASIC0.66□□□□□ -2.3
LIMS3P0CW19 MIR200A-201ENST00000384875 90 ntBASIC0.66□□□□□ -2.3
LIMS3P0CW19 MIR1253-201ENST00000408273 105 ntBASIC0.66□□□□□ -2.3
LIMS3P0CW19 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.66□□□□□ -2.3
LIMS3P0CW19 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC0.66□□□□□ -2.3
LIMS3P0CW19 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC0.66□□□□□ -2.3
LIMS3P0CW19 SNRPFP4-201ENST00000456366 242 ntBASIC0.66□□□□□ -2.3
LIMS3P0CW19 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC0.66□□□□□ -2.3
LIMS3P0CW19 SRRM1P2-201ENST00000464531 1192 ntBASIC0.66□□□□□ -2.3
LIMS3P0CW19 RNU6-197P-201ENST00000516680 100 ntBASIC0.66□□□□□ -2.3
LIMS3P0CW19 AC136628.3-201ENST00000521868 290 ntBASIC0.66□□□□□ -2.3
LIMS3P0CW19 MTCO3P23-201ENST00000561363 289 ntBASIC0.66□□□□□ -2.3
LIMS3P0CW19 AC016727.2-201ENST00000603988 621 ntBASIC0.66□□□□□ -2.3
LIMS3P0CW19 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.66□□□□□ -2.3
LIMS3P0CW19 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.66□□□□□ -2.3
LIMS3P0CW19 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC0.66□□□□□ -2.3
LIMS3P0CW19 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.66□□□□□ -2.3
LIMS3P0CW19 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
LIMS3P0CW19 MIR378A-201ENST00000362177 66 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 RNU6-1127P-201ENST00000384580 107 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 MIR608-201ENST00000384820 100 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 MIR549A-201ENST00000385268 96 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 SNORA16.2-201ENST00000390991 127 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 RN7SKP200-201ENST00000410564 320 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 AC114482.1-201ENST00000418010 247 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 AC010154.1-201ENST00000425857 269 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 AC002429.1-201ENST00000437672 148 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 NFU1P2-201ENST00000448700 469 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 RPS29P15-201ENST00000458329 171 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 SNORD124-201ENST00000459577 104 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 GMFBP1-201ENST00000467831 427 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.65□□□□□ -2.31
LIMS3P0CW19 AC092991.1-201ENST00000477176 376 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 AC048334.1-201ENST00000477975 159 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.65□□□□□ -2.31
LIMS3P0CW19 AC025423.5-201ENST00000550230 219 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 192.8 ms