Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.75□□□□□ -1.97
HMGB1P09429 NFU1P2-201ENST00000448700 469 ntBASIC2.75□□□□□ -1.97
HMGB1P09429 RNU6-718P-201ENST00000516166 105 ntBASIC2.75□□□□□ -1.97
HMGB1P09429 AC010900.2-201ENST00000604508 210 ntBASIC2.75□□□□□ -1.97
HMGB1P09429 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.75□□□□□ -1.97
HMGB1P09429 AC046143.2-201ENST00000609789 160 ntBASIC2.75□□□□□ -1.97
HMGB1P09429 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HMGB1P09429 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
HMGB1P09429 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
HMGB1P09429 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HMGB1P09429 AL356292.1-201ENST00000283110 373 ntBASIC2.74□□□□□ -1.97
HMGB1P09429 Y_RNA.135-201ENST00000363439 95 ntBASIC2.74□□□□□ -1.97
HMGB1P09429 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
HMGB1P09429 RNU6-439P-201ENST00000384188 106 ntBASIC2.74□□□□□ -1.97
HMGB1P09429 Y_RNA.510-201ENST00000384511 114 ntBASIC2.74□□□□□ -1.97
HMGB1P09429 MIR548F1-201ENST00000408667 84 ntBASIC2.74□□□□□ -1.97
HMGB1P09429 AC079354.2-201ENST00000453523 154 ntBASIC2.74□□□□□ -1.97
HMGB1P09429 AC007215.1-201ENST00000464893 276 ntBASIC2.74□□□□□ -1.97
HMGB1P09429 AC114982.1-201ENST00000469402 321 ntBASIC2.74□□□□□ -1.97
HMGB1P09429 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.74□□□□□ -1.97
HMGB1P09429 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.74□□□□□ -1.97
HMGB1P09429 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.74□□□□□ -1.97
HMGB1P09429 AC009318.2-201ENST00000610917 651 ntBASIC2.74□□□□□ -1.97
HMGB1P09429 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.74□□□□□ -1.97
HMGB1P09429 RNU2-7P-201ENST00000410794 178 ntBASIC2.73□□□□□ -1.97
HMGB1P09429 AC004866.1-201ENST00000411748 78 ntBASIC2.73□□□□□ -1.97
HMGB1P09429 RPS15AP28-201ENST00000435088 386 ntBASIC2.73□□□□□ -1.97
HMGB1P09429 Z82188.1-201ENST00000436709 154 ntBASIC2.73□□□□□ -1.97
HMGB1P09429 MTND4LP16-201ENST00000440828 295 ntBASIC2.73□□□□□ -1.97
HMGB1P09429 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.73□□□□□ -1.97
HMGB1P09429 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.73□□□□□ -1.97
HMGB1P09429 AP003465.2-201ENST00000602571 373 ntBASIC2.73□□□□□ -1.97
HMGB1P09429 AC090517.2-201ENST00000614966 680 ntBASIC2.73□□□□□ -1.97
HMGB1P09429 MIR6766-201ENST00000622641 72 ntBASIC2.73□□□□□ -1.97
HMGB1P09429 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.73□□□□□ -1.97
HMGB1P09429 AC243829.7-201ENST00000633081 225 ntBASIC2.73□□□□□ -1.97
HMGB1P09429 MIR3688-2-201ENST00000636963 87 ntBASIC2.73□□□□□ -1.97
HMGB1P09429 RNU6-112P-201ENST00000363599 104 ntBASIC2.72□□□□□ -1.97
HMGB1P09429 RNU1-96P-201ENST00000364163 162 ntBASIC2.72□□□□□ -1.97
HMGB1P09429 RNU4-9P-201ENST00000364951 139 ntBASIC2.72□□□□□ -1.97
HMGB1P09429 SNORA67.4-201ENST00000384688 142 ntBASIC2.72□□□□□ -1.97
HMGB1P09429 snoU13.30-201ENST00000458951 104 ntBASIC2.72□□□□□ -1.97
HMGB1P09429 AC067942.3-201ENST00000512025 362 ntBASIC2.72□□□□□ -1.97
HMGB1P09429 RNU6-948P-201ENST00000516374 107 ntBASIC2.72□□□□□ -1.97
HMGB1P09429 RNU6-856P-201ENST00000516959 98 ntBASIC2.72□□□□□ -1.97
HMGB1P09429 SNORA44.1-201ENST00000517031 108 ntBASIC2.72□□□□□ -1.97
HMGB1P09429 RNU1-117P-201ENST00000517041 158 ntBASIC2.72□□□□□ -1.97
HMGB1P09429 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.72□□□□□ -1.97
HMGB1P09429 AC069114.2-201ENST00000604699 304 ntBASIC2.72□□□□□ -1.97
HMGB1P09429 AL137847.3-201ENST00000611521 109 ntBASIC2.72□□□□□ -1.97
HMGB1P09429 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
HMGB1P09429 Y_RNA.157-201ENST00000363638 102 ntBASIC2.71□□□□□ -1.98
HMGB1P09429 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
HMGB1P09429 RNU6-1013P-201ENST00000384180 107 ntBASIC2.71□□□□□ -1.98
HMGB1P09429 RNA5SP118-201ENST00000410385 109 ntBASIC2.71□□□□□ -1.98
HMGB1P09429 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.71□□□□□ -1.98
HMGB1P09429 AC099677.2-201ENST00000436385 175 ntBASIC2.71□□□□□ -1.98
HMGB1P09429 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.71□□□□□ -1.98
HMGB1P09429 HMGN2P23-201ENST00000456759 269 ntBASIC2.71□□□□□ -1.98
HMGB1P09429 FO393415.2-201ENST00000480085 343 ntBASIC2.71□□□□□ -1.98
HMGB1P09429 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.71□□□□□ -1.98
HMGB1P09429 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC2.71□□□□□ -1.98
HMGB1P09429 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.71□□□□□ -1.98
HMGB1P09429 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.71□□□□□ -1.98
HMGB1P09429 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.7□□□□□ -1.98
HMGB1P09429 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.7□□□□□ -1.98
HMGB1P09429 AC060773.1-201ENST00000421698 310 ntBASIC2.7□□□□□ -1.98
HMGB1P09429 AC018634.1-201ENST00000437554 401 ntBASIC2.7□□□□□ -1.98
HMGB1P09429 AC074290.1-201ENST00000448883 135 ntBASIC2.7□□□□□ -1.98
HMGB1P09429 HMGN1P13-201ENST00000505795 138 ntBASIC2.7□□□□□ -1.98
HMGB1P09429 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.7□□□□□ -1.98
HMGB1P09429 AC011406.1-201ENST00000512440 370 ntBASIC2.7□□□□□ -1.98
HMGB1P09429 RNU6-864P-201ENST00000516256 108 ntBASIC2.7□□□□□ -1.98
HMGB1P09429 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.7□□□□□ -1.98
HMGB1P09429 MIR4273-201ENST00000582824 84 ntBASIC2.7□□□□□ -1.98
HMGB1P09429 AC010928.2-201ENST00000588017 287 ntBASIC2.7□□□□□ -1.98
HMGB1P09429 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.7□□□□□ -1.98
HMGB1P09429 BX322639.1-202ENST00000423987 2213 ntBASIC2.7□□□□□ -1.98
HMGB1P09429 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
HMGB1P09429 U8.10-201ENST00000384260 133 ntBASIC2.69□□□□□ -1.98
HMGB1P09429 RNU6-831P-201ENST00000384548 107 ntBASIC2.69□□□□□ -1.98
HMGB1P09429 MIR30A-201ENST00000385092 71 ntBASIC2.69□□□□□ -1.98
HMGB1P09429 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
HMGB1P09429 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC2.69□□□□□ -1.98
HMGB1P09429 AL445305.1-201ENST00000432577 575 ntBASIC2.69□□□□□ -1.98
HMGB1P09429 MTND1P34-201ENST00000438556 671 ntBASIC2.69□□□□□ -1.98
HMGB1P09429 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.69□□□□□ -1.98
HMGB1P09429 RNU2-34P-201ENST00000516534 121 ntBASIC2.69□□□□□ -1.98
HMGB1P09429 RNA5SP384-201ENST00000516615 116 ntBASIC2.69□□□□□ -1.98
HMGB1P09429 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.69□□□□□ -1.98
HMGB1P09429 7SK.7-201ENST00000603504 247 ntBASIC2.69□□□□□ -1.98
HMGB1P09429 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.69□□□□□ -1.98
HMGB1P09429 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.69□□□□□ -1.98
HMGB1P09429 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
HMGB1P09429 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
HMGB1P09429 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HMGB1P09429 RNU6-975P-201ENST00000384296 105 ntBASIC2.68□□□□□ -1.98
HMGB1P09429 RNU6-541P-201ENST00000384709 110 ntBASIC2.68□□□□□ -1.98
HMGB1P09429 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HMGB1P09429 MTATP6P13-201ENST00000438531 667 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms