| HPRT1 | P00492 | RNU6-227P-201 | ENST00000362865 | 103 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | SNORA29-201 | ENST00000384183 | 140 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | AL161935.2-201 | ENST00000414627 | 60 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | AL122017.1-201 | ENST00000435858 | 784 nt | TSL 2 BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | TRAPPC2P8-201 | ENST00000440676 | 396 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | TRAPPC2P3-201 | ENST00000443200 | 321 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | AC073910.1-201 | ENST00000445047 | 438 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | USP9YP29-201 | ENST00000445112 | 563 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | AL360091.2-201 | ENST00000446847 | 650 nt | TSL 5 BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | snoU13.27-201 | ENST00000459278 | 104 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | RN7SL429P-201 | ENST00000479090 | 223 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | RN7SL489P-201 | ENST00000486185 | 223 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | RN7SL327P-201 | ENST00000488659 | 223 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | AC110009.1-201 | ENST00000512965 | 451 nt | TSL 5 BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | AC010493.1-201 | ENST00000513479 | 292 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | SNORA14.1-201 | ENST00000516113 | 141 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | RNU4ATAC8P-201 | ENST00000516196 | 109 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | RNU6-548P-201 | ENST00000517083 | 115 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | AC027807.1-201 | ENST00000559921 | 996 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | NIFKP6-201 | ENST00000598115 | 845 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | AC016727.2-201 | ENST00000603988 | 621 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | AC073114.1-201 | ENST00000612027 | 490 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | RN7SL853P-201 | ENST00000617250 | 223 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | AC005562.2-201 | ENST00000618264 | 111 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | AC005609.4-201 | ENST00000625071 | 447 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HPRT1 | P00492 | BX322639.1-202 | ENST00000423987 | 2213 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | RNU5A-6P-201 | ENST00000384136 | 116 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | RNU6-939P-201 | ENST00000384634 | 107 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | MIR1261-201 | ENST00000408659 | 82 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | RNU6-174P-201 | ENST00000410406 | 106 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC083900.1-201 | ENST00000421964 | 469 nt | TSL 2 BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | CST2P1-201 | ENST00000425770 | 87 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC073464.1-201 | ENST00000429823 | 534 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AL606534.3-201 | ENST00000437499 | 373 nt | TSL 5 BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC069257.2-201 | ENST00000441819 | 155 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC016717.1-201 | ENST00000448918 | 286 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AL591504.1-201 | ENST00000450681 | 414 nt | TSL 3 BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | RPS29P27-201 | ENST00000463711 | 170 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | ARL2BPP4-201 | ENST00000506854 | 471 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | TRAPPC2P7-201 | ENST00000509650 | 231 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | BMPR1B-AS1-201 | ENST00000510795 | 511 nt | TSL 3 BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC025465.4-201 | ENST00000513422 | 638 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | LINC02155-201 | ENST00000519215 | 407 nt | TSL 5 BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AP005436.2-201 | ENST00000528458 | 252 nt | TSL 5 BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC016256.1-201 | ENST00000547971 | 354 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | LINC02461-201 | ENST00000553211 | 836 nt | TSL 3 BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC126323.6-201 | ENST00000561701 | 451 nt | TSL 3 BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC015688.6-201 | ENST00000577737 | 104 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | MIR5006-201 | ENST00000583027 | 110 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AL391646.1-201 | ENST00000603860 | 190 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AL645939.4-201 | ENST00000604495 | 135 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC064836.2-201 | ENST00000609491 | 462 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | MIR7843-201 | ENST00000622274 | 79 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | MIR338-201 | ENST00000636369 | 67 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | CEP290-201 | ENST00000309041 | 7616 nt | APPRIS ALT1 TSL 5 BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | E2F5-208 | ENST00000521429 | 1551 nt | TSL 5 BASIC | 1.08 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | MTND5P35-201 | ENST00000557537 | 1720 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | SNORD33-201 | ENST00000362761 | 85 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | SNORA4.2-201 | ENST00000365313 | 147 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | DEFB125-201 | ENST00000382410 | 587 nt | APPRIS P1 TSL 1 (best) BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | MIR549A-201 | ENST00000385268 | 96 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | RNU6-1158P-201 | ENST00000391167 | 107 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC004386.2-201 | ENST00000441858 | 148 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | MCHR2-AS1-203 | ENST00000451220 | 429 nt | TSL 3 BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | LINC01774-201 | ENST00000453569 | 595 nt | TSL 2 BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | MTCO2P18-201 | ENST00000457151 | 658 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | RNU6-1038P-201 | ENST00000516516 | 104 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC023200.1-201 | ENST00000519660 | 651 nt | TSL 3 BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC104576.1-201 | ENST00000524225 | 88 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC019288.1-201 | ENST00000557918 | 224 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | MIR4424-201 | ENST00000585257 | 86 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC104458.1-201 | ENST00000608243 | 463 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AL353149.1-201 | ENST00000610667 | 244 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | GNAS-AS1_4.1-201 | ENST00000616546 | 112 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | RBMS2-209 | ENST00000639027 | 192 nt | TSL 5 BASIC | 1.07 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | ZNF209P-201 | ENST00000593450 | 2304 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | SNORA33-201 | ENST00000363664 | 130 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | RNU6-1317P-201 | ENST00000364582 | 104 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | MIR1289-2-201 | ENST00000408360 | 111 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | RNA5SP494-201 | ENST00000410653 | 129 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | COX6CP10-201 | ENST00000416832 | 224 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | LINC01701-201 | ENST00000419614 | 451 nt | TSL 2 BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AL353193.1-201 | ENST00000421444 | 268 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | MTCO2P19-201 | ENST00000427513 | 598 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | RPS6P15-201 | ENST00000431996 | 751 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC010095.1-201 | ENST00000443543 | 144 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC116666.1-201 | ENST00000453915 | 551 nt | TSL 5 BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | TPTE2P5-203 | ENST00000458118 | 728 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC074124.1-201 | ENST00000502368 | 375 nt | TSL 3 BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | RNU6-189P-201 | ENST00000516120 | 101 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | RN7SKP179-201 | ENST00000516126 | 217 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | RNU2-34P-201 | ENST00000516534 | 121 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | Y_RNA.695-201 | ENST00000516715 | 107 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | IGHVII-53-1-201 | ENST00000519538 | 255 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AP003086.2-201 | ENST00000534168 | 437 nt | TSL 3 BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AC025423.5-201 | ENST00000550230 | 219 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | AL442163.1-201 | ENST00000557251 | 515 nt | TSL 5 BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | TCL6_2.1-201 | ENST00000615162 | 119 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | MPP6-209 | ENST00000625307 | 126 nt | TSL 5 BASIC | 1.06 | □□□□□ -2.24 | | |
| HPRT1 | P00492 | ZNF260-203 | ENST00000588993 | 4174 nt | APPRIS P1 TSL 1 (best) BASIC | 1.06 | □□□□□ -2.24 | | |