Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 UBE2V1P8-201ENST00000437166 265 ntBASIC1.54□□□□□ -2.16
CLDN3O15551 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.54□□□□□ -2.16
CLDN3O15551 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.54□□□□□ -2.16
CLDN3O15551 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.54□□□□□ -2.16
CLDN3O15551 AL357134.1-201ENST00000445848 426 ntBASIC1.54□□□□□ -2.16
CLDN3O15551 snoU13.30-201ENST00000458951 104 ntBASIC1.54□□□□□ -2.16
CLDN3O15551 MTCO3P38-201ENST00000468910 766 ntBASIC1.54□□□□□ -2.16
CLDN3O15551 AC091435.1-201ENST00000505442 584 ntBASIC1.54□□□□□ -2.16
CLDN3O15551 HMGB1P29-201ENST00000505659 499 ntBASIC1.54□□□□□ -2.16
CLDN3O15551 RNU6-323P-201ENST00000521915 107 ntBASIC1.54□□□□□ -2.16
CLDN3O15551 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.54□□□□□ -2.16
CLDN3O15551 AC025423.5-201ENST00000550230 219 ntBASIC1.54□□□□□ -2.16
CLDN3O15551 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.54□□□□□ -2.16
CLDN3O15551 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.54□□□□□ -2.16
CLDN3O15551 AC092747.3-201ENST00000603769 301 ntBASIC1.54□□□□□ -2.16
CLDN3O15551 AP001485.1-201ENST00000604799 199 ntBASIC1.54□□□□□ -2.16
CLDN3O15551 DLEU2_1.1-201ENST00000612089 120 ntBASIC1.54□□□□□ -2.16
CLDN3O15551 DLEU2_1.2-201ENST00000614667 120 ntBASIC1.54□□□□□ -2.16
CLDN3O15551 AC068205.3-201ENST00000636385 468 ntBASIC1.54□□□□□ -2.16
CLDN3O15551 RNU6-545P-201ENST00000362681 104 ntBASIC1.53□□□□□ -2.16
CLDN3O15551 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.53□□□□□ -2.16
CLDN3O15551 RNU4-55P-201ENST00000410731 137 ntBASIC1.53□□□□□ -2.16
CLDN3O15551 MTND1P26-201ENST00000440488 538 ntBASIC1.53□□□□□ -2.16
CLDN3O15551 MTCO1P44-201ENST00000441935 243 ntBASIC1.53□□□□□ -2.16
CLDN3O15551 Y_RNA.638-201ENST00000459374 113 ntBASIC1.53□□□□□ -2.16
CLDN3O15551 U8.21-201ENST00000459536 136 ntBASIC1.53□□□□□ -2.16
CLDN3O15551 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.53□□□□□ -2.16
CLDN3O15551 AC025465.4-201ENST00000513422 638 ntBASIC1.53□□□□□ -2.16
CLDN3O15551 RNA5SP401-201ENST00000515920 127 ntBASIC1.53□□□□□ -2.16
CLDN3O15551 RNU6-1041P-201ENST00000516254 102 ntBASIC1.53□□□□□ -2.16
CLDN3O15551 RNA5SP61-201ENST00000516453 100 ntBASIC1.53□□□□□ -2.16
CLDN3O15551 AC087854.1-201ENST00000519706 414 ntBASIC1.53□□□□□ -2.16
CLDN3O15551 AC104576.1-201ENST00000524225 88 ntBASIC1.53□□□□□ -2.16
CLDN3O15551 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC1.53□□□□□ -2.16
CLDN3O15551 MIR4422-201ENST00000581938 83 ntBASIC1.53□□□□□ -2.16
CLDN3O15551 MIR4424-201ENST00000585257 86 ntBASIC1.53□□□□□ -2.16
CLDN3O15551 AL357078.3-201ENST00000607528 618 ntBASIC1.53□□□□□ -2.16
CLDN3O15551 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.53□□□□□ -2.17
CLDN3O15551 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
CLDN3O15551 RNU4-66P-201ENST00000365199 138 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 Y_RNA.553-201ENST00000384670 102 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 RN7SKP51-201ENST00000410781 304 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 ARL5AP1-201ENST00000418991 388 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 AC099677.2-201ENST00000436385 175 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC1.52□□□□□ -2.17
CLDN3O15551 HSPE1P9-201ENST00000440046 311 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 MTCO1P19-201ENST00000443487 500 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 AC009474.2-201ENST00000451383 136 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC1.52□□□□□ -2.17
CLDN3O15551 AC098862.1-201ENST00000504991 413 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 AC108078.1-201ENST00000508073 725 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC1.52□□□□□ -2.17
CLDN3O15551 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.52□□□□□ -2.17
CLDN3O15551 CENPUP1-201ENST00000526649 1202 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 AP005597.4-201ENST00000526762 229 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.52□□□□□ -2.17
CLDN3O15551 AC006362.1-201ENST00000567392 174 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 MIR4421-201ENST00000578133 69 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 AC064836.2-201ENST00000609491 462 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 MIR8063-201ENST00000621930 81 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 MIR3974-201ENST00000637126 96 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 AC010615.1-201ENST00000594254 1764 ntBASIC1.52□□□□□ -2.17
CLDN3O15551 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
CLDN3O15551 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
CLDN3O15551 RNU1-96P-201ENST00000364163 162 ntBASIC1.51□□□□□ -2.17
CLDN3O15551 Y_RNA.359-201ENST00000365498 102 ntBASIC1.51□□□□□ -2.17
CLDN3O15551 RNU6-418P-201ENST00000384035 107 ntBASIC1.51□□□□□ -2.17
CLDN3O15551 Y_RNA.595-201ENST00000410403 105 ntBASIC1.51□□□□□ -2.17
CLDN3O15551 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.51□□□□□ -2.17
CLDN3O15551 FO393415.2-201ENST00000480085 343 ntBASIC1.51□□□□□ -2.17
CLDN3O15551 AC010424.1-201ENST00000506336 297 ntBASIC1.51□□□□□ -2.17
CLDN3O15551 SNORA40.12-201ENST00000516329 111 ntBASIC1.51□□□□□ -2.17
CLDN3O15551 AC016256.1-201ENST00000547971 354 ntBASIC1.51□□□□□ -2.17
CLDN3O15551 SUB1P3-201ENST00000564581 315 ntBASIC1.51□□□□□ -2.17
CLDN3O15551 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.51□□□□□ -2.17
CLDN3O15551 MIR4753-201ENST00000585119 83 ntBASIC1.51□□□□□ -2.17
CLDN3O15551 AC139792.3-201ENST00000623525 224 ntBASIC1.51□□□□□ -2.17
CLDN3O15551 AC100821.1-201ENST00000523153 2479 ntBASIC1.51□□□□□ -2.17
CLDN3O15551 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
CLDN3O15551 SNORA7.1-201ENST00000363750 139 ntBASIC1.5□□□□□ -2.17
CLDN3O15551 RNU6-1317P-201ENST00000364582 104 ntBASIC1.5□□□□□ -2.17
CLDN3O15551 SNORA29-201ENST00000384183 140 ntBASIC1.5□□□□□ -2.17
CLDN3O15551 RNA5SP494-201ENST00000410653 129 ntBASIC1.5□□□□□ -2.17
CLDN3O15551 MTCO1P21-201ENST00000416634 589 ntBASIC1.5□□□□□ -2.17
CLDN3O15551 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.5□□□□□ -2.17
CLDN3O15551 AC114801.2-201ENST00000503825 781 ntBASIC1.5□□□□□ -2.17
CLDN3O15551 AC079140.3-201ENST00000511111 550 ntBASIC1.5□□□□□ -2.17
CLDN3O15551 RNA5SP437-201ENST00000517249 129 ntBASIC1.5□□□□□ -2.17
CLDN3O15551 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.5□□□□□ -2.17
CLDN3O15551 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.5□□□□□ -2.17
CLDN3O15551 BNIP3P10-201ENST00000605360 577 ntBASIC1.5□□□□□ -2.17
CLDN3O15551 AC104458.1-201ENST00000608243 463 ntBASIC1.5□□□□□ -2.17
CLDN3O15551 AL121757.2-201ENST00000611223 313 ntBASIC1.5□□□□□ -2.17
CLDN3O15551 AC005562.2-201ENST00000618264 111 ntBASIC1.5□□□□□ -2.17
CLDN3O15551 AC103705.1-201ENST00000619013 241 ntBASIC1.5□□□□□ -2.17
CLDN3O15551 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.5□□□□□ -2.17
CLDN3O15551 AC090582.1-201ENST00000636321 199 ntBASIC1.5□□□□□ -2.17
CLDN3O15551 AL161722.3-201ENST00000605789 2983 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 RNU6-562P-201ENST00000362731 107 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms