Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 MTND5P22-201ENST00000458380 195 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 RNU7-87P-201ENST00000459343 62 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 RNU7-169P-201ENST00000459456 61 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 TOMM22P6-201ENST00000465035 409 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 SCARNA17.1-201ENST00000516211 143 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 RNU2-53P-201ENST00000516257 147 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 SCARNA17.2-201ENST00000516334 143 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 SNORA31.16-201ENST00000516773 139 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 RNA5SP54-201ENST00000516951 92 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 AC026241.1-201ENST00000517873 2142 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 MIR5188-201ENST00000583467 113 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 AC136443.5-201ENST00000603741 370 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 SCARNA17.4-201ENST00000614296 143 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 AL132822.1-201ENST00000617063 513 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 AC091812.1-201ENST00000432235 1948 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 RNU6-874P-201ENST00000362390 105 ntBASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 RNU5F-3P-201ENST00000363767 117 ntBASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 Y_RNA.380-201ENST00000365663 111 ntBASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 SNORA9-201ENST00000384215 133 ntBASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 Y_RNA.459-201ENST00000384251 102 ntBASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 RNA5SP210-201ENST00000391034 120 ntBASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 Y_RNA.645-201ENST00000391229 102 ntBASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 AL139281.1-201ENST00000422120 335 ntBASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 EIF4EP4-201ENST00000424916 578 ntBASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 AC096644.2-201ENST00000429278 159 ntBASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 USP9YP16-201ENST00000430287 407 ntBASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 USP9YP23-201ENST00000455085 407 ntBASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 RPS3P1-201ENST00000456781 192 ntBASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 RNU6-1137P-201ENST00000517073 99 ntBASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 AL078605.1-201ENST00000603529 500 ntBASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 AC104695.3-201ENST00000604052 296 ntBASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 MIR7157-201ENST00000635801 60 ntBASIC3.11□□□□□ -1.91
LIMCH1Q9UPQ0 MTND5P16-201ENST00000460269 1703 ntBASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 SNORA68.1-201ENST00000364537 132 ntBASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 Y_RNA.319-201ENST00000365138 92 ntBASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 SNORA63.7-201ENST00000365579 123 ntBASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 U8.10-201ENST00000384260 133 ntBASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 Y_RNA.485-201ENST00000384395 102 ntBASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 RNU1-139P-201ENST00000391307 165 ntBASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 AL356057.3-201ENST00000402607 340 ntBASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 RNA5SP492-201ENST00000411330 114 ntBASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 CHEK2P4-201ENST00000450340 246 ntBASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 RPS29P30-201ENST00000600975 111 ntBASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 AL356575.1-201ENST00000603008 283 ntBASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 MIR7515-201ENST00000637837 67 ntBASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
LIMCH1Q9UPQ0 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 RNY3P11-201ENST00000364153 102 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 MIR128-1-201ENST00000384921 82 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 MIR9-1-201ENST00000385198 89 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 RNU6-823P-201ENST00000391042 103 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 RPL21P75-201ENST00000396599 483 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 RPL21P28-201ENST00000401418 483 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 AC113618.1-201ENST00000416747 285 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 MTCO3P8-201ENST00000453691 755 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 RPL21P39-201ENST00000463605 483 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 AC087190.1-201ENST00000484462 480 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 SRIP1-201ENST00000489235 288 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 AC093591.1-201ENST00000491435 481 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 RPL21P16-201ENST00000495531 483 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 RNU6-1114P-201ENST00000516022 107 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 AC040926.1-201ENST00000530195 238 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 HSPE1P20-201ENST00000538133 289 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 AL442163.3-201ENST00000554110 156 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 AC124312.5-201ENST00000604451 268 ntBASIC3.09□□□□□ -1.91
LIMCH1Q9UPQ0 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 Y_RNA.152-201ENST00000363578 100 ntBASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 RNU4-50P-201ENST00000364361 141 ntBASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 Y_RNA.527-201ENST00000384573 102 ntBASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 Y_RNA.557-201ENST00000384680 107 ntBASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 MIR320B2-201ENST00000408479 138 ntBASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 AL590556.1-201ENST00000423231 483 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms