Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 Y_RNA.691-201ENST00000516611 103 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 RNU6-567P-201ENST00000516746 107 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 RNU6-273P-201ENST00000516937 96 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.9□□□□□ -2.11
LIME1Q9H400 NDUFA5P6-201ENST00000542110 379 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.9□□□□□ -2.11
LIME1Q9H400 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.9□□□□□ -2.11
LIME1Q9H400 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.9□□□□□ -2.11
LIME1Q9H400 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.9□□□□□ -2.11
LIME1Q9H400 FGF7P1-201ENST00000582820 288 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 AC011494.1-201ENST00000596454 237 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.9□□□□□ -2.11
LIME1Q9H400 AC124303.1-201ENST00000605703 360 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 MIR3976-201ENST00000606807 139 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 MIR6766-201ENST00000622641 72 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
LIME1Q9H400 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC1.89□□□□□ -2.11
LIME1Q9H400 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
LIME1Q9H400 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.89□□□□□ -2.11
LIME1Q9H400 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC1.89□□□□□ -2.11
LIME1Q9H400 Y_RNA.123-201ENST00000363338 102 ntBASIC1.89□□□□□ -2.11
LIME1Q9H400 Y_RNA.184-201ENST00000363884 108 ntBASIC1.89□□□□□ -2.11
LIME1Q9H400 MIR521-1-201ENST00000384902 87 ntBASIC1.89□□□□□ -2.11
LIME1Q9H400 MIR561-201ENST00000385216 97 ntBASIC1.89□□□□□ -2.11
LIME1Q9H400 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC1.89□□□□□ -2.11
LIME1Q9H400 AL139396.1-201ENST00000421137 167 ntBASIC1.89□□□□□ -2.11
LIME1Q9H400 EIF4EP2-201ENST00000422816 654 ntBASIC1.89□□□□□ -2.11
LIME1Q9H400 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.89□□□□□ -2.11
LIME1Q9H400 AC009238.1-201ENST00000442165 424 ntBASIC1.89□□□□□ -2.11
LIME1Q9H400 AC009237.6-201ENST00000446969 424 ntBASIC1.89□□□□□ -2.11
LIME1Q9H400 AL139109.1-201ENST00000455491 297 ntBASIC1.89□□□□□ -2.11
LIME1Q9H400 PMCHL2-203ENST00000457791 237 ntBASIC1.89□□□□□ -2.11
LIME1Q9H400 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.89□□□□□ -2.11
LIME1Q9H400 AC021146.2-201ENST00000504736 556 ntBASIC1.89□□□□□ -2.11
LIME1Q9H400 AC005741.1-201ENST00000511094 432 ntBASIC1.89□□□□□ -2.11
LIME1Q9H400 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC1.89□□□□□ -2.11
LIME1Q9H400 AC034114.1-201ENST00000520293 285 ntBASIC1.89□□□□□ -2.11
LIME1Q9H400 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.89□□□□□ -2.11
LIME1Q9H400 AC022616.8-201ENST00000533569 253 ntBASIC1.89□□□□□ -2.11
LIME1Q9H400 AC007375.1-201ENST00000554513 578 ntBASIC1.89□□□□□ -2.11
LIME1Q9H400 CYP4A27P-201ENST00000567218 190 ntBASIC1.89□□□□□ -2.11
LIME1Q9H400 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.89□□□□□ -2.11
LIME1Q9H400 AL132822.1-201ENST00000617063 513 ntBASIC1.89□□□□□ -2.11
LIME1Q9H400 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
LIME1Q9H400 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
LIME1Q9H400 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.88□□□□□ -2.11
LIME1Q9H400 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
LIME1Q9H400 Y_RNA.226-201ENST00000364337 114 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 RNU4-56P-201ENST00000364700 142 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 SNORA29-201ENST00000384183 140 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 RN7SKP158-201ENST00000410453 326 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 Y_RNA.597-201ENST00000410463 100 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 RPL23AP36-201ENST00000413895 458 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 AC007677.1-201ENST00000445757 515 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 PPP1R2P5-201ENST00000457256 603 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 SNORD5.1-201ENST00000458800 75 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 AF186996.7-201ENST00000492781 209 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.88□□□□□ -2.11
LIME1Q9H400 Y_RNA.682-201ENST00000516457 100 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.88□□□□□ -2.11
LIME1Q9H400 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.88□□□□□ -2.11
LIME1Q9H400 CYCSP26-201ENST00000534107 320 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 MIR4790-201ENST00000577799 79 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 MIR3923-201ENST00000579521 83 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 AP001094.1-201ENST00000579805 193 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 MIR5002-201ENST00000584713 97 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 SNORD14A-201ENST00000606526 91 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 AC009994.1-201ENST00000606889 253 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 uc_338.5-201ENST00000611839 155 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 PCGEM1.1-201ENST00000613431 131 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 MIR6895-201ENST00000613497 78 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 AC245884.12-201ENST00000615364 59 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 AP000553.5-201ENST00000641933 54 ntBASIC1.88□□□□□ -2.11
LIME1Q9H400 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC1.88□□□□□ -2.11
LIME1Q9H400 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
LIME1Q9H400 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
LIME1Q9H400 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
LIME1Q9H400 MIRLET7G-201ENST00000362280 84 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 Y_RNA.88-201ENST00000363029 99 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 RNU6-593P-201ENST00000364716 112 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 Y_RNA.303-201ENST00000364998 94 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.87□□□□□ -2.11
LIME1Q9H400 RNU6-546P-201ENST00000383991 107 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 RNU6-790P-201ENST00000384479 105 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 RNU6-306P-201ENST00000384617 107 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 MIR144-201ENST00000384886 86 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 MIR524-201ENST00000385242 87 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 MIR548F5-201ENST00000408421 86 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 RNU6-174P-201ENST00000410406 106 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 RNU2-32P-201ENST00000411193 191 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 AL358453.1-201ENST00000422522 250 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 AC012306.1-201ENST00000423267 114 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.87□□□□□ -2.11
LIME1Q9H400 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.87□□□□□ -2.11
LIME1Q9H400 RNU7-30P-201ENST00000516835 62 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 MYL12BP1-201ENST00000569826 507 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 MIR5694-201ENST00000581190 76 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 AC019193.3-201ENST00000609144 554 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 MIR6845-201ENST00000613182 61 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms