Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.06□□□□□ -2.08
NKX3-1Q99801 MIR203B-201ENST00000636080 86 ntBASIC2.06□□□□□ -2.08
NKX3-1Q99801 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.06□□□□□ -2.08
NKX3-1Q99801 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.06□□□□□ -2.08
NKX3-1Q99801 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.05□□□□□ -2.08
NKX3-1Q99801 Y_RNA.387-201ENST00000383918 102 ntBASIC2.05□□□□□ -2.08
NKX3-1Q99801 RNU6-301P-201ENST00000384277 107 ntBASIC2.05□□□□□ -2.08
NKX3-1Q99801 SNORA46.1-201ENST00000391069 153 ntBASIC2.05□□□□□ -2.08
NKX3-1Q99801 MTCYBP2-201ENST00000407745 171 ntBASIC2.05□□□□□ -2.08
NKX3-1Q99801 RNA5SP201-201ENST00000410316 124 ntBASIC2.05□□□□□ -2.08
NKX3-1Q99801 RNA5SP494-201ENST00000410653 129 ntBASIC2.05□□□□□ -2.08
NKX3-1Q99801 RNU2-41P-201ENST00000410991 178 ntBASIC2.05□□□□□ -2.08
NKX3-1Q99801 AL358453.1-201ENST00000422522 250 ntBASIC2.05□□□□□ -2.08
NKX3-1Q99801 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.05□□□□□ -2.08
NKX3-1Q99801 AC087477.1-201ENST00000465747 340 ntBASIC2.05□□□□□ -2.08
NKX3-1Q99801 AC018868.1-201ENST00000491307 315 ntBASIC2.05□□□□□ -2.08
NKX3-1Q99801 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.05□□□□□ -2.08
NKX3-1Q99801 AC121758.2-201ENST00000553271 193 ntBASIC2.05□□□□□ -2.08
NKX3-1Q99801 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.05□□□□□ -2.08
NKX3-1Q99801 C8orf59P2-201ENST00000603441 271 ntBASIC2.05□□□□□ -2.08
NKX3-1Q99801 PCGEM1.1-201ENST00000613431 131 ntBASIC2.05□□□□□ -2.08
NKX3-1Q99801 AC245884.12-201ENST00000615364 59 ntBASIC2.05□□□□□ -2.08
NKX3-1Q99801 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
NKX3-1Q99801 AC005336.3-201ENST00000623833 2679 ntBASIC2.04□□□□□ -2.08
NKX3-1Q99801 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
NKX3-1Q99801 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.04□□□□□ -2.08
NKX3-1Q99801 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
NKX3-1Q99801 MIR27B-201ENST00000385129 97 ntBASIC2.04□□□□□ -2.08
NKX3-1Q99801 MIR208B-201ENST00000401172 77 ntBASIC2.04□□□□□ -2.08
NKX3-1Q99801 RNU2-63P-201ENST00000410792 194 ntBASIC2.04□□□□□ -2.08
NKX3-1Q99801 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.04□□□□□ -2.08
NKX3-1Q99801 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.04□□□□□ -2.08
NKX3-1Q99801 AC243428.1-201ENST00000421099 264 ntBASIC2.04□□□□□ -2.08
NKX3-1Q99801 AL353997.1-201ENST00000432936 108 ntBASIC2.04□□□□□ -2.08
NKX3-1Q99801 RPS15AP28-201ENST00000435088 386 ntBASIC2.04□□□□□ -2.08
NKX3-1Q99801 RPL30P15-201ENST00000457129 321 ntBASIC2.04□□□□□ -2.08
NKX3-1Q99801 RPL30P10-201ENST00000488148 337 ntBASIC2.04□□□□□ -2.08
NKX3-1Q99801 HMGB3P3-201ENST00000510526 400 ntBASIC2.04□□□□□ -2.08
NKX3-1Q99801 AC026436.1-201ENST00000510537 270 ntBASIC2.04□□□□□ -2.08
NKX3-1Q99801 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.04□□□□□ -2.08
NKX3-1Q99801 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.04□□□□□ -2.08
NKX3-1Q99801 Y_RNA.718-201ENST00000517110 102 ntBASIC2.04□□□□□ -2.08
NKX3-1Q99801 HSPE1P18-201ENST00000517602 280 ntBASIC2.04□□□□□ -2.08
NKX3-1Q99801 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.04□□□□□ -2.08
NKX3-1Q99801 ZNF720P1-201ENST00000562403 1939 ntBASIC2.04□□□□□ -2.08
NKX3-1Q99801 CYP4A27P-201ENST00000567218 190 ntBASIC2.04□□□□□ -2.08
NKX3-1Q99801 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC2.04□□□□□ -2.08
NKX3-1Q99801 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.04□□□□□ -2.08
NKX3-1Q99801 PISRT1.1-201ENST00000616930 107 ntBASIC2.04□□□□□ -2.08
NKX3-1Q99801 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.03□□□□□ -2.08
NKX3-1Q99801 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.03□□□□□ -2.08
NKX3-1Q99801 RNU6-595P-201ENST00000363944 107 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 SNORD32B-201ENST00000364460 84 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 Y_RNA.384-201ENST00000383909 102 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 RNU6-1297P-201ENST00000384415 104 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 MIR524-201ENST00000385242 87 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
NKX3-1Q99801 RNU6-1093P-201ENST00000391194 107 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 RNU2-48P-201ENST00000410694 191 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 RNU2-32P-201ENST00000411193 191 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 MTCO3P29-201ENST00000432119 779 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.03□□□□□ -2.08
NKX3-1Q99801 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.03□□□□□ -2.08
NKX3-1Q99801 CYP2C59P-201ENST00000457790 269 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 AC068781.1-201ENST00000488231 618 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 AC097473.1-201ENST00000508142 408 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.03□□□□□ -2.08
NKX3-1Q99801 Y_RNA.675-201ENST00000516389 149 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.03□□□□□ -2.08
NKX3-1Q99801 AC009127.3-201ENST00000570531 403 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 AC046143.2-201ENST00000609789 160 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.03□□□□□ -2.08
NKX3-1Q99801 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 AC084781.2-201ENST00000615568 161 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 AL359697.1-201ENST00000624879 587 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 AC243829.7-201ENST00000633081 225 ntBASIC2.03□□□□□ -2.08
NKX3-1Q99801 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.03□□□□□ -2.08
NKX3-1Q99801 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.09
NKX3-1Q99801 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
NKX3-1Q99801 MIRLET7G-201ENST00000362280 84 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 RNU4-79P-201ENST00000362764 141 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 SNORA38-201ENST00000363946 132 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 Y_RNA.259-201ENST00000364619 101 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 RNU4-56P-201ENST00000364700 142 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 RNA5SP126-201ENST00000365092 109 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 Y_RNA.405-201ENST00000383979 100 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 Y_RNA.451-201ENST00000384200 100 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 U8.10-201ENST00000384260 133 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 Y_RNA.509-201ENST00000384506 99 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 Y_RNA.524-201ENST00000384564 100 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 Y_RNA.561-201ENST00000384694 100 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 MIR32-201ENST00000384965 70 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 MIR29B2-201ENST00000385055 81 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 AC022028.1-201ENST00000412054 408 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 USMG5P1-201ENST00000425964 177 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.02□□□□□ -2.09
NKX3-1Q99801 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.02□□□□□ -2.09
NKX3-1Q99801 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.02□□□□□ -2.09
NKX3-1Q99801 TRBV12-1-201ENST00000479785 344 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 144.5 ms