Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RNU6-682P-201ENST00000363843 106 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 Y_RNA.304-201ENST00000365011 112 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 RNU6-975P-201ENST00000384296 105 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 RNU6-918P-201ENST00000391219 106 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 SNORA57.1-201ENST00000391227 145 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 MTCO2P33-201ENST00000402100 465 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 RPL21P65-201ENST00000406094 466 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 RNA5SP317-201ENST00000410176 116 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 RNA5SP311-201ENST00000411290 116 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 OOSP1P1-201ENST00000423265 274 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 TBCAP1-201ENST00000436520 327 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 CYP2C59P-201ENST00000457790 269 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
CCDC140Q96MF4 RNA5SP315-201ENST00000516340 116 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 RNA5SP312-201ENST00000517068 116 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 RNA5SP490-201ENST00000517141 136 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 CARD18-203ENST00000532895 422 ntTSL 2 BASIC3.09□□□□□ -1.91
CCDC140Q96MF4 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC140Q96MF4 MIR4308-201ENST00000580634 81 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 AL355297.2-201ENST00000604792 129 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 AC072026.1-201ENST00000605023 201 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 AC099778.2-201ENST00000610904 211 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 AL591424.2-201ENST00000617023 128 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
CCDC140Q96MF4 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.92
CCDC140Q96MF4 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.09□□□□□ -1.92
CCDC140Q96MF4 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.92
CCDC140Q96MF4 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.08□□□□□ -1.92
CCDC140Q96MF4 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.08□□□□□ -1.92
CCDC140Q96MF4 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
CCDC140Q96MF4 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.08□□□□□ -1.92
CCDC140Q96MF4 SNORA26.5-201ENST00000391215 123 ntBASIC3.08□□□□□ -1.92
CCDC140Q96MF4 PCNPP3-201ENST00000393579 471 ntBASIC3.08□□□□□ -1.92
CCDC140Q96MF4 MIR548M-201ENST00000408260 86 ntBASIC3.08□□□□□ -1.92
CCDC140Q96MF4 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.08□□□□□ -1.92
CCDC140Q96MF4 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC140Q96MF4 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC140Q96MF4 GOT2P5-201ENST00000433995 546 ntBASIC3.08□□□□□ -1.92
CCDC140Q96MF4 AC083863.1-201ENST00000438811 231 ntBASIC3.08□□□□□ -1.92
CCDC140Q96MF4 AC080013.2-201ENST00000460866 323 ntBASIC3.08□□□□□ -1.92
CCDC140Q96MF4 RNU6-948P-201ENST00000516374 107 ntBASIC3.08□□□□□ -1.92
CCDC140Q96MF4 AC018630.3-201ENST00000542637 96 ntBASIC3.08□□□□□ -1.92
CCDC140Q96MF4 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC140Q96MF4 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC140Q96MF4 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC140Q96MF4 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC140Q96MF4 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
CCDC140Q96MF4 LINC02471-203ENST00000641941 4752 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 Y_RNA.124-201ENST00000363339 93 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 Y_RNA.233-201ENST00000364407 101 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 SNORA20B-201ENST00000384220 132 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 RNU1-13P-201ENST00000384499 162 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 AL355796.1-201ENST00000406706 323 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 RN7SKP27-201ENST00000410684 333 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 RNU2-63P-201ENST00000410792 194 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 AL513477.1-202ENST00000417061 214 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 AL049830.2-201ENST00000480072 201 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC140Q96MF4 RAC1P2-201ENST00000511164 579 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 SNORA70.12-201ENST00000516084 153 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 RN7SKP40-201ENST00000517211 242 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC140Q96MF4 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC140Q96MF4 AC022616.8-201ENST00000533569 253 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC140Q96MF4 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC140Q96MF4 AC006130.2-201ENST00000586202 326 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 ZYXP1-201ENST00000617638 118 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 AC112484.5-201ENST00000624189 228 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC140Q96MF4 TNPO1P3-201ENST00000436471 2662 ntBASIC3.07□□□□□ -1.92
CCDC140Q96MF4 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
CCDC140Q96MF4 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC140Q96MF4 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
CCDC140Q96MF4 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC140Q96MF4 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.06□□□□□ -1.92
CCDC140Q96MF4 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC140Q96MF4 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC140Q96MF4 RNU6-653P-201ENST00000363074 106 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 RNU6-774P-201ENST00000363238 107 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 Y_RNA.287-201ENST00000364853 94 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 Y_RNA.293-201ENST00000364908 93 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 SNORA40.19-201ENST00000390846 128 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 RNU6-220P-201ENST00000390919 107 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC140Q96MF4 AC004552.1-201ENST00000419089 348 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 Z82209.1-201ENST00000422141 2135 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.06□□□□□ -1.92
CCDC140Q96MF4 AL121890.1-201ENST00000435457 205 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.06□□□□□ -1.92
CCDC140Q96MF4 SNORD65B-201ENST00000459126 73 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 RPS26P3-201ENST00000470205 348 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 AC090543.2-201ENST00000483963 348 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 AC004057.1-201ENST00000485827 348 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 AC026402.1-201ENST00000513642 170 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 Y_RNA.662-201ENST00000516028 97 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 RNA5SP179-201ENST00000517284 121 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 YPEL5P3-201ENST00000547227 352 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 PRELID2P1-201ENST00000552837 301 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 MIR1254-2-201ENST00000579553 63 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 128.4 ms