Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RNA5SP59-201ENST00000410922 110 ntBASIC1.76□□□□□ -2.13
VPS39Q96JC1 HMGN2P26-201ENST00000463169 339 ntBASIC1.76□□□□□ -2.13
VPS39Q96JC1 RPS29P27-201ENST00000463711 170 ntBASIC1.76□□□□□ -2.13
VPS39Q96JC1 UBL5P3-201ENST00000475112 231 ntBASIC1.76□□□□□ -2.13
VPS39Q96JC1 AC132942.1-201ENST00000486753 483 ntBASIC1.76□□□□□ -2.13
VPS39Q96JC1 AC091885.1-201ENST00000506658 268 ntBASIC1.76□□□□□ -2.13
VPS39Q96JC1 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.76□□□□□ -2.13
VPS39Q96JC1 AC087854.1-201ENST00000519706 414 ntBASIC1.76□□□□□ -2.13
VPS39Q96JC1 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.76□□□□□ -2.13
VPS39Q96JC1 AL157687.1-201ENST00000554853 619 ntBASIC1.76□□□□□ -2.13
VPS39Q96JC1 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.76□□□□□ -2.13
VPS39Q96JC1 MIR4298-201ENST00000584380 73 ntBASIC1.76□□□□□ -2.13
VPS39Q96JC1 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.76□□□□□ -2.13
VPS39Q96JC1 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.76□□□□□ -2.13
VPS39Q96JC1 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.76□□□□□ -2.13
VPS39Q96JC1 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.76□□□□□ -2.13
VPS39Q96JC1 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
VPS39Q96JC1 MTND4P23-201ENST00000447723 1363 ntBASIC1.75□□□□□ -2.13
VPS39Q96JC1 RNU6-254P-201ENST00000363377 107 ntBASIC1.75□□□□□ -2.13
VPS39Q96JC1 EIF4E2P1-201ENST00000393781 255 ntBASIC1.75□□□□□ -2.13
VPS39Q96JC1 NCOR1P3-201ENST00000420479 303 ntBASIC1.75□□□□□ -2.13
VPS39Q96JC1 RPL23AP95-201ENST00000426806 265 ntBASIC1.75□□□□□ -2.13
VPS39Q96JC1 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.75□□□□□ -2.13
VPS39Q96JC1 PPP1R2P5-201ENST00000457256 603 ntBASIC1.75□□□□□ -2.13
VPS39Q96JC1 RPL9P9-202ENST00000466501 579 ntBASIC1.75□□□□□ -2.13
VPS39Q96JC1 AC092989.1-201ENST00000481235 277 ntBASIC1.75□□□□□ -2.13
VPS39Q96JC1 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.75□□□□□ -2.13
VPS39Q96JC1 AC022447.4-201ENST00000504053 364 ntBASIC1.75□□□□□ -2.13
VPS39Q96JC1 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.75□□□□□ -2.13
VPS39Q96JC1 RNU6-718P-201ENST00000516166 105 ntBASIC1.75□□□□□ -2.13
VPS39Q96JC1 RNVU1-2-201ENST00000516326 135 ntBASIC1.75□□□□□ -2.13
VPS39Q96JC1 RNU6-612P-201ENST00000516909 102 ntBASIC1.75□□□□□ -2.13
VPS39Q96JC1 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.75□□□□□ -2.13
VPS39Q96JC1 ZNF519P2-201ENST00000557032 169 ntBASIC1.75□□□□□ -2.13
VPS39Q96JC1 VN1R107P-201ENST00000601784 209 ntBASIC1.75□□□□□ -2.13
VPS39Q96JC1 AC016925.2-201ENST00000605108 242 ntBASIC1.75□□□□□ -2.13
VPS39Q96JC1 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.75□□□□□ -2.13
VPS39Q96JC1 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
VPS39Q96JC1 RNU6-661P-201ENST00000362409 107 ntBASIC1.74□□□□□ -2.13
VPS39Q96JC1 RNU6-234P-201ENST00000365229 104 ntBASIC1.74□□□□□ -2.13
VPS39Q96JC1 Y_RNA.402-201ENST00000383972 102 ntBASIC1.74□□□□□ -2.13
VPS39Q96JC1 Y_RNA.450-201ENST00000384198 113 ntBASIC1.74□□□□□ -2.13
VPS39Q96JC1 RNU6-378P-201ENST00000384324 107 ntBASIC1.74□□□□□ -2.13
VPS39Q96JC1 MIR583-201ENST00000384846 75 ntBASIC1.74□□□□□ -2.13
VPS39Q96JC1 MIR181A1-201ENST00000385026 110 ntBASIC1.74□□□□□ -2.13
VPS39Q96JC1 RNU6-1148P-201ENST00000410992 104 ntBASIC1.74□□□□□ -2.13
VPS39Q96JC1 AL590632.1-201ENST00000424289 371 ntBASIC1.74□□□□□ -2.13
VPS39Q96JC1 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.74□□□□□ -2.13
VPS39Q96JC1 AL359672.1-201ENST00000442302 409 ntBASIC1.74□□□□□ -2.13
VPS39Q96JC1 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.74□□□□□ -2.13
VPS39Q96JC1 RNU6-1037P-201ENST00000459571 107 ntBASIC1.74□□□□□ -2.13
VPS39Q96JC1 AC025465.4-201ENST00000513422 638 ntBASIC1.74□□□□□ -2.13
VPS39Q96JC1 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.74□□□□□ -2.13
VPS39Q96JC1 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.74□□□□□ -2.13
VPS39Q96JC1 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.74□□□□□ -2.13
VPS39Q96JC1 MIR3169-201ENST00000578032 83 ntBASIC1.74□□□□□ -2.13
VPS39Q96JC1 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.74□□□□□ -2.13
VPS39Q96JC1 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.74□□□□□ -2.13
VPS39Q96JC1 AC025754.2-201ENST00000606491 432 ntBASIC1.74□□□□□ -2.13
VPS39Q96JC1 AC139792.2-201ENST00000624218 587 ntBASIC1.74□□□□□ -2.13
VPS39Q96JC1 MIR424-201ENST00000362227 98 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 RNY4P14-201ENST00000363656 96 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 SNORD32B-201ENST00000364460 84 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 MIR549A-201ENST00000385268 96 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 MIR1261-201ENST00000408659 82 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 RN7SKP61-201ENST00000410642 295 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 RNU6-325P-201ENST00000411132 105 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 AP000275.1-201ENST00000411943 390 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.73□□□□□ -2.13
VPS39Q96JC1 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.73□□□□□ -2.13
VPS39Q96JC1 AL133396.1-201ENST00000432048 687 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 AL645568.3-201ENST00000433683 316 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.73□□□□□ -2.13
VPS39Q96JC1 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.73□□□□□ -2.13
VPS39Q96JC1 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.73□□□□□ -2.13
VPS39Q96JC1 snoU13.6-201ENST00000458785 104 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 RNU7-66P-201ENST00000459469 62 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 AC079140.5-201ENST00000507882 310 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.73□□□□□ -2.13
VPS39Q96JC1 AC005741.1-201ENST00000511094 432 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 RNA5SP490-201ENST00000517141 136 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 AC109635.3-201ENST00000529536 185 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 MRPS36P4-201ENST00000534436 298 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.73□□□□□ -2.13
VPS39Q96JC1 AC109446.1-201ENST00000566172 220 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 AC104581.2-201ENST00000572227 430 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.73□□□□□ -2.13
VPS39Q96JC1 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.73□□□□□ -2.13
VPS39Q96JC1 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.73□□□□□ -2.13
VPS39Q96JC1 AC009318.2-201ENST00000610917 651 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 AL590240.4-201ENST00000616908 390 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 AC090617.10-201ENST00000624308 134 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.73□□□□□ -2.13
VPS39Q96JC1 AC121333.1-201ENST00000567488 2709 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 AC009541.1-201ENST00000438279 2662 ntBASIC1.73□□□□□ -2.13
VPS39Q96JC1 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
VPS39Q96JC1 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.72□□□□□ -2.13
VPS39Q96JC1 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.72□□□□□ -2.13
VPS39Q96JC1 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 141.3 ms