| APPL2 | Q8NEU8 | RNU5B-2P-201 | ENST00000363036 | 113 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | Y_RNA.151-201 | ENST00000363566 | 112 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | RNU6-743P-201 | ENST00000364151 | 106 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | SNORD116-11-201 | ENST00000383882 | 92 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | SNORA29-201 | ENST00000384183 | 140 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | MIR521-1-201 | ENST00000384902 | 87 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | MIR518A2-201 | ENST00000384966 | 87 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AL445646.1-201 | ENST00000431784 | 216 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | HMGN2P3-201 | ENST00000433603 | 273 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | HMGN2P5-201 | ENST00000436882 | 273 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AC133865.1-201 | ENST00000438619 | 339 nt | TSL 3 BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | ZEB1-AS1-204 | ENST00000450834 | 576 nt | TSL 3 BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | SPIN4-AS1-201 | ENST00000451979 | 426 nt | TSL 2 BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | RPL23AP3-201 | ENST00000453844 | 468 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AC104435.1-201 | ENST00000483483 | 166 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AC116563.1-201 | ENST00000505454 | 396 nt | TSL 3 BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AC005741.1-201 | ENST00000511094 | 432 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | MTND4LP26-201 | ENST00000518144 | 282 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AC103794.1-201 | ENST00000531763 | 197 nt | TSL 3 BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AC027018.1-202 | ENST00000534723 | 383 nt | TSL 3 BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | LINC02095-202 | ENST00000543512 | 323 nt | TSL 3 BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AC146944.4-201 | ENST00000602697 | 718 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | MIR3976-201 | ENST00000606807 | 139 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AC092794.1-201 | ENST00000612734 | 582 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AL359314.1-201 | ENST00000616913 | 261 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | ZEB2_AS1_1.1-201 | ENST00000621504 | 128 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | ETDC-201 | ENST00000635820 | 180 nt | APPRIS P1 BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | MUC15-202 | ENST00000436318 | 3118 nt | TSL 5 BASIC | 2.24 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AL161668.1-201 | ENST00000320322 | 358 nt | TSL 1 (best) BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | U3.9-201 | ENST00000363823 | 204 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | RNU6-1286P-201 | ENST00000383871 | 107 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | RNU6-784P-201 | ENST00000384330 | 106 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | RNU6-933P-201 | ENST00000384424 | 107 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AC009480.1-201 | ENST00000402410 | 412 nt | TSL 3 BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | RNA5SP450-201 | ENST00000411206 | 102 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | SRIP3-201 | ENST00000413200 | 219 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | WARS2P1-201 | ENST00000429678 | 537 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | NFU1P2-201 | ENST00000448700 | 469 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | MRPS36P4-201 | ENST00000534436 | 298 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | PWRN1-203 | ENST00000564898 | 389 nt | TSL 5 BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AC109446.1-201 | ENST00000566172 | 220 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | MIR4299-201 | ENST00000577899 | 72 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | SNORA59B-202 | ENST00000578183 | 701 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | FGF7P1-201 | ENST00000582820 | 288 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AC018638.8-201 | ENST00000588755 | 281 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | CYLC1-201 | ENST00000329312 | 2106 nt | APPRIS P3 TSL 1 (best) BASIC | 2.23 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | PTPRQ-208 | ENST00000614701 | 8289 nt | APPRIS P1 TSL 5 BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | C1orf141-205 | ENST00000475209 | 2079 nt | APPRIS ALT2 TSL 5 BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | CGGBP1-202 | ENST00000398392 | 5298 nt | APPRIS P1 BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | RNU6-26P-201 | ENST00000383985 | 107 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | RNU6ATAC38P-201 | ENST00000408119 | 126 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | SIRPG-AS1-201 | ENST00000437384 | 410 nt | TSL 3 BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | snoU13.6-201 | ENST00000458785 | 104 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AC130509.1-201 | ENST00000464158 | 433 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | KRTAP13-6P-201 | ENST00000508999 | 371 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AC093259.1-201 | ENST00000509755 | 300 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | RNU6-1088P-201 | ENST00000516850 | 104 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AF235103.2-201 | ENST00000525753 | 346 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AC011092.2-201 | ENST00000533659 | 586 nt | TSL 1 (best) BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | EIF4A1P12-201 | ENST00000551910 | 141 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AC245748.3-201 | ENST00000588710 | 241 nt | TSL 3 BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AP000654.2-201 | ENST00000605633 | 586 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | AC009994.1-201 | ENST00000606889 | 253 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | TMEM154-204 | ENST00000613578 | 486 nt | APPRIS ALT2 TSL 5 BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | KIF20B-202 | ENST00000371728 | 6419 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | ASPM-202 | ENST00000367408 | 3747 nt | TSL 1 (best) BASIC | 2.22 | □□□□□ -2.05 | | |
| APPL2 | Q8NEU8 | ZNF355P-201 | ENST00000427301 | 3216 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | ATF1-201 | ENST00000262053 | 2181 nt | APPRIS P1 TSL 1 (best) BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | RNA5SP276-201 | ENST00000362580 | 94 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | RNU6-234P-201 | ENST00000365229 | 104 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | RNU4-52P-201 | ENST00000384209 | 138 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | MIR208B-201 | ENST00000401172 | 77 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | SNRPG-202 | ENST00000413456 | 398 nt | TSL 3 BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | RPL30P16-201 | ENST00000419341 | 429 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | MTND2P29-201 | ENST00000438595 | 412 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | AL138921.2-201 | ENST00000443919 | 578 nt | TSL 5 BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | SNRPG-205 | ENST00000449935 | 428 nt | TSL 1 (best) BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | AL034345.2-203 | ENST00000453417 | 383 nt | TSL 3 BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | AC132942.1-201 | ENST00000486753 | 483 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | AC010457.1-201 | ENST00000510469 | 458 nt | TSL 3 BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | AC010420.1-201 | ENST00000515077 | 509 nt | TSL 3 BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | RNU6-991P-201 | ENST00000516168 | 107 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | IGHVII-53-1-201 | ENST00000519538 | 255 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | AP003123.1-201 | ENST00000526041 | 333 nt | TSL 2 BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | AP003033.1-201 | ENST00000527244 | 415 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | AP001496.1-201 | ENST00000579113 | 471 nt | TSL 4 BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | AC084782.3-201 | ENST00000612282 | 578 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | HS1BP3-208 | ENST00000631166 | 78 nt | TSL 5 BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | KNL1-204 | ENST00000527044 | 5404 nt | TSL 5 BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | KTN1-214 | ENST00000554507 | 2057 nt | TSL 1 (best) BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | ZNF720P1-201 | ENST00000562403 | 1939 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | LRRCC1-202 | ENST00000414626 | 4493 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.21 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | Y_RNA.86-201 | ENST00000363020 | 111 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | RNU6-968P-201 | ENST00000384076 | 107 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | SNORD14D-201 | ENST00000384390 | 87 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | MIR1289-2-201 | ENST00000408360 | 111 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | RNU6ATAC25P-201 | ENST00000408798 | 117 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | FO680682.1-201 | ENST00000421261 | 345 nt | TSL 3 BASIC | 2.2 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | AC096920.1-201 | ENST00000423991 | 241 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| APPL2 | Q8NEU8 | PCMTD1P1-201 | ENST00000455560 | 355 nt | BASIC | 2.2 | □□□□□ -2.06 | | |