Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC104564.1-201ENST00000493028 407 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 AC016632.1-201ENST00000503994 196 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 AC091885.1-201ENST00000506658 268 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 RNU6-1332P-201ENST00000516666 104 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 RNA5SP490-201ENST00000517141 136 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 AC087854.1-201ENST00000519706 414 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 AC091544.4-201ENST00000555268 342 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 MIR3923-201ENST00000579521 83 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 AC084768.2-201ENST00000622736 221 ntBASIC1.44□□□□□ -2.18
CCDC54Q8NEL0 RNU6-227P-201ENST00000362865 103 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 RNU6-1252P-201ENST00000363054 104 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 SNORD113-7-201ENST00000363762 77 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 RNA5SP465-201ENST00000391195 109 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 RNU4-26P-201ENST00000410270 107 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 RNA5SP100-201ENST00000410903 110 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 RNA5SP59-201ENST00000410922 110 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 MTCO3P41-201ENST00000414801 328 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 AC012306.1-201ENST00000423267 114 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 AL590632.1-201ENST00000424289 371 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 SNRPEP8-201ENST00000442866 260 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 MTND1P11-201ENST00000456661 876 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 RNU6-1037P-201ENST00000459571 107 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 RPL9P9-202ENST00000466501 579 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 AC079140.5-201ENST00000507882 310 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 RNU6-506P-201ENST00000516553 94 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 EIF4A1P12-201ENST00000551910 141 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 AC245505.1-201ENST00000556398 224 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 TPRKBP2-201ENST00000565969 475 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 CYP4A27P-201ENST00000567218 190 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 SNORA59B-202ENST00000578183 701 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 uc_338.5-201ENST00000611839 155 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 FER-210ENST00000628534 558 ntTSL 5 BASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 MIR1321-201ENST00000637766 79 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 AC024614.3-201ENST00000637860 256 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 AC009541.1-201ENST00000438279 2662 ntBASIC1.43□□□□□ -2.18
CCDC54Q8NEL0 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 Y_RNA.3-201ENST00000362331 103 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 RNU1-76P-201ENST00000362903 159 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 SNORD116-4-201ENST00000384733 96 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 EIF4E2P1-201ENST00000393781 255 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 AL033519.2-201ENST00000403958 392 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 MTCO1P44-201ENST00000441935 243 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 FTH1P25-201ENST00000447665 469 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 RNA5SP57-201ENST00000459463 123 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 AC130509.1-201ENST00000464158 433 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 AC010409.1-201ENST00000487382 476 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 RPS29P21-201ENST00000496272 170 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 AC105313.1-201ENST00000509121 353 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 RNU6-250P-201ENST00000516958 103 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 AC016957.1-201ENST00000534895 309 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 AC021231.3-201ENST00000558497 370 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 AL162413.1-201ENST00000603198 110 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 AC016727.2-201ENST00000603988 621 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 AP000654.2-201ENST00000605633 586 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 AC004492.1-201ENST00000607036 742 ntBASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.42□□□□□ -2.18
CCDC54Q8NEL0 LINC02555-201ENST00000563933 1951 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 U3.9-201ENST00000363823 204 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 Y_RNA.516-201ENST00000384541 124 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 SNORA48.1-201ENST00000390879 135 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 RNU6-332P-201ENST00000391193 108 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 AC009310.1-201ENST00000414414 451 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 AC007098.1-201ENST00000420122 367 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 AC123900.1-201ENST00000420390 96 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 EIF4EP2-201ENST00000422816 654 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 AC099677.2-201ENST00000436385 175 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 SEPT14P3-201ENST00000439401 183 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 AC003989.2-201ENST00000440224 169 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 AL732372.2-207ENST00000445840 183 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 AL035666.1-201ENST00000446195 348 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 SEPT14P2-201ENST00000453405 183 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 AC010531.2-201ENST00000465012 153 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 SEPT14P4-201ENST00000513445 186 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 RNU6-720P-201ENST00000516363 108 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 FO082796.1-201ENST00000523795 183 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 EIF1P4-201ENST00000572664 335 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 MIR3198-2-201ENST00000577868 80 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 AC100830.2-201ENST00000581636 240 ntBASIC1.41□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 131.3 ms