Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 MTND4P23-201ENST00000447723 1363 ntBASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 AC027514.1-201ENST00000588561 1603 ntBASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 MIR489-201ENST00000384923 84 ntBASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 SNORD73A-201ENST00000386062 65 ntBASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 AC012306.1-201ENST00000423267 114 ntBASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 RPS23P5-201ENST00000495419 428 ntBASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 AC021146.2-201ENST00000504736 556 ntBASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 OSBPL9P5-201ENST00000542581 171 ntBASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 Z99497.2-201ENST00000603634 310 ntBASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 AC007684.1-201ENST00000609671 477 ntBASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 HULC.1-201ENST00000612720 240 ntBASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 AC083806.3-201ENST00000614016 455 ntBASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 AC022513.1-201ENST00000624512 117 ntBASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 AL450472.1-202ENST00000637286 180 ntBASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
HDDC3Q8N4P3 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.68□□□□□ -2.14
HDDC3Q8N4P3 RNU6-414P-201ENST00000363705 104 ntBASIC1.68□□□□□ -2.14
HDDC3Q8N4P3 RNU6-1093P-201ENST00000391194 107 ntBASIC1.68□□□□□ -2.14
HDDC3Q8N4P3 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.68□□□□□ -2.14
HDDC3Q8N4P3 MTCO3P46-201ENST00000425787 232 ntBASIC1.68□□□□□ -2.14
HDDC3Q8N4P3 MTCO2P18-201ENST00000457151 658 ntBASIC1.68□□□□□ -2.14
HDDC3Q8N4P3 AC087477.1-201ENST00000465747 340 ntBASIC1.68□□□□□ -2.14
HDDC3Q8N4P3 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.68□□□□□ -2.14
HDDC3Q8N4P3 RNU6-970P-201ENST00000516312 107 ntBASIC1.68□□□□□ -2.14
HDDC3Q8N4P3 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.68□□□□□ -2.14
HDDC3Q8N4P3 AC104581.2-201ENST00000572227 430 ntBASIC1.68□□□□□ -2.14
HDDC3Q8N4P3 MIR3122-201ENST00000577243 73 ntBASIC1.68□□□□□ -2.14
HDDC3Q8N4P3 AL391646.1-201ENST00000603860 190 ntBASIC1.68□□□□□ -2.14
HDDC3Q8N4P3 SNORA43.4-201ENST00000629559 138 ntBASIC1.68□□□□□ -2.14
HDDC3Q8N4P3 AC006026.1-201ENST00000444025 1803 ntBASIC1.68□□□□□ -2.14
HDDC3Q8N4P3 MTND5P9-201ENST00000503854 1755 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 AL159152.1-201ENST00000635019 2587 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 Y_RNA.1-201ENST00000352915 104 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 Y_RNA.132-201ENST00000363421 102 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 RNU6-112P-201ENST00000363599 104 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 Y_RNA.255-201ENST00000364581 97 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 RNU6-338P-201ENST00000383888 105 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 SNORA12.2-201ENST00000391040 156 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 AC007395.1-201ENST00000451333 677 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 snoU13.9-201ENST00000458927 103 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 RNU6-1037P-201ENST00000459571 107 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 AC007547.1-201ENST00000462177 490 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 RPL39P5-202ENST00000512505 151 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 SNORD60.2-201ENST00000516883 86 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 RNU6-612P-201ENST00000516909 102 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 AP005136.1-201ENST00000579765 429 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 AC069114.2-201ENST00000604699 304 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 AC009994.1-201ENST00000606889 253 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 uc_338.5-201ENST00000611839 155 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 AC005520.5-201ENST00000613926 164 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.67□□□□□ -2.14
HDDC3Q8N4P3 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 MIR340-201ENST00000362125 95 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 RNU1-76P-201ENST00000362903 159 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 Y_RNA.381-201ENST00000365666 102 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 RNU6-1103P-201ENST00000384150 107 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 SNORA75-201ENST00000384158 137 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 RNU6-1158P-201ENST00000391167 107 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 RNU2-7P-201ENST00000410794 178 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 EBAG9P1-201ENST00000418955 543 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 AL513185.2-201ENST00000425543 193 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 MTCO2P19-201ENST00000427513 598 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 ATP5J2P3-201ENST00000451550 258 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 AC016925.1-201ENST00000458303 298 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 AC005908.1-201ENST00000468701 347 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 HMGB1P29-201ENST00000505659 499 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 CCDC34P1-201ENST00000507441 517 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 SNORA14.1-201ENST00000516113 141 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 RNU6-189P-201ENST00000516120 101 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 AC024614.2-201ENST00000577584 372 ntBASIC1.66□□□□□ -2.14
HDDC3Q8N4P3 SNORD116-8-201ENST00000384365 95 ntBASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 MIR1267-201ENST00000408723 78 ntBASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 AC090960.1-201ENST00000421072 306 ntBASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 USP9YP28-201ENST00000435142 589 ntBASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 TPTE2P5-203ENST00000458118 728 ntBASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 RPL9P9-202ENST00000466501 579 ntBASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 AC096745.1-201ENST00000509945 370 ntBASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 MTND3P12-201ENST00000559068 328 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 169.4 ms