Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC068137.4-201ENST00000638485 296 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
SKA3Q8IX90 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.62□□□□□ -2.15
SKA3Q8IX90 Y_RNA.99-201ENST00000363138 105 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 Y_RNA.123-201ENST00000363338 102 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 U3.9-201ENST00000363823 204 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 Y_RNA.295-201ENST00000364918 102 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 MIR521-1-201ENST00000384902 87 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 SNORA40.19-201ENST00000390846 128 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 SNORA40.18-201ENST00000391200 128 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 SNORD115-47-201ENST00000391226 86 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 MIR1261-201ENST00000408659 82 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 VN1R36P-201ENST00000414936 291 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 AC012306.1-201ENST00000423267 114 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 BX510359.4-201ENST00000423750 193 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 USP9YP28-201ENST00000435142 589 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 AL353689.1-201ENST00000438895 199 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.61□□□□□ -2.15
SKA3Q8IX90 AC245102.2-201ENST00000448956 180 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.61□□□□□ -2.15
SKA3Q8IX90 RNU7-187P-201ENST00000458985 68 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 TRBVA-201ENST00000498804 316 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 AC107393.1-201ENST00000512403 346 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.61□□□□□ -2.15
SKA3Q8IX90 MIR4299-201ENST00000577899 72 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
SKA3Q8IX90 PCGEM1.1-201ENST00000613431 131 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 AC005296.1-201ENST00000616145 209 ntBASIC1.61□□□□□ -2.15
SKA3Q8IX90 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.61□□□□□ -2.15
SKA3Q8IX90 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.61□□□□□ -2.15
SKA3Q8IX90 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.6□□□□□ -2.15
SKA3Q8IX90 Y_RNA.100-201ENST00000363141 102 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 RNU6-1164P-201ENST00000364428 107 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SKA3Q8IX90 RNU6-26P-201ENST00000383985 107 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 Y_RNA.414-201ENST00000384011 101 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
SKA3Q8IX90 SNORA11.2-201ENST00000408318 127 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 MIR1283-2-201ENST00000408621 87 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 RNU6-373P-201ENST00000411247 98 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.6□□□□□ -2.15
SKA3Q8IX90 MTND1P34-201ENST00000438556 671 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 RPL23AP3-201ENST00000453844 468 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 PPP1R2P5-201ENST00000457256 603 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 AC007547.1-201ENST00000462177 490 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 AC096745.1-201ENST00000509945 370 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 FAM206BP-201ENST00000510179 541 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.6□□□□□ -2.15
SKA3Q8IX90 RNU6-256P-201ENST00000516747 97 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.6□□□□□ -2.15
SKA3Q8IX90 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.6□□□□□ -2.15
SKA3Q8IX90 AC016256.1-201ENST00000547971 354 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 EIF4A1P12-201ENST00000551910 141 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 AC090517.1-201ENST00000569307 266 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.6□□□□□ -2.15
SKA3Q8IX90 AC009994.1-201ENST00000606889 253 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 AL133215.3-201ENST00000609801 448 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 AC090517.2-201ENST00000614966 680 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 AL359314.1-201ENST00000616913 261 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 AL136221.1-201ENST00000621449 509 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
SKA3Q8IX90 MIR3688-2-201ENST00000636963 87 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 MIR3662-201ENST00000637030 95 ntBASIC1.6□□□□□ -2.15
SKA3Q8IX90 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.59□□□□□ -2.15
SKA3Q8IX90 RNU6-968P-201ENST00000384076 107 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 Y_RNA.573-201ENST00000384763 105 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 MIR583-201ENST00000384846 75 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 MIR597-201ENST00000384968 97 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 U8.13-201ENST00000390842 128 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 RNA5SP465-201ENST00000391195 109 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 RN7SKP284-201ENST00000411002 343 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.59□□□□□ -2.15
SKA3Q8IX90 AL590632.1-201ENST00000424289 371 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 HMGN2P3-201ENST00000433603 273 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 HMGN2P5-201ENST00000436882 273 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 UBE2V1P8-201ENST00000437166 265 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.59□□□□□ -2.15
SKA3Q8IX90 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC1.59□□□□□ -2.15
SKA3Q8IX90 RPS29P11-201ENST00000496507 171 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.59□□□□□ -2.15
SKA3Q8IX90 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 AP005660.1-201ENST00000522972 293 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.59□□□□□ -2.15
SKA3Q8IX90 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
SKA3Q8IX90 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.59□□□□□ -2.15
SKA3Q8IX90 AC010928.2-201ENST00000588017 287 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 MIR3976-201ENST00000606807 139 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 MIR8076-201ENST00000611401 83 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 AC005520.5-201ENST00000613926 164 ntBASIC1.59□□□□□ -2.15
SKA3Q8IX90 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.59□□□□□ -2.15
SKA3Q8IX90 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.59□□□□□ -2.15
SKA3Q8IX90 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.16
SKA3Q8IX90 AL356292.1-201ENST00000283110 373 ntBASIC1.58□□□□□ -2.16
SKA3Q8IX90 Y_RNA.6-201ENST00000362350 114 ntBASIC1.58□□□□□ -2.16
SKA3Q8IX90 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.58□□□□□ -2.16
SKA3Q8IX90 SNORA29-201ENST00000384183 140 ntBASIC1.58□□□□□ -2.16
SKA3Q8IX90 Y_RNA.453-201ENST00000384223 109 ntBASIC1.58□□□□□ -2.16
SKA3Q8IX90 RNU6-790P-201ENST00000384479 105 ntBASIC1.58□□□□□ -2.16
SKA3Q8IX90 RNU6-160P-201ENST00000384591 107 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 230.3 ms