Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 U8.20-201ENST00000459445 131 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 AP001025.1-201ENST00000486139 332 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.08□□□□□ -1.92
VPS53Q5VIR6 RNU7-175P-201ENST00000515915 61 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 HSPE1P20-201ENST00000538133 289 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS53Q5VIR6 AC006600.1-201ENST00000572529 153 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 MIR3117-201ENST00000584034 78 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 AC006023.1-201ENST00000603944 259 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 AL355297.3-201ENST00000604082 446 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 AC100812.1-201ENST00000607622 580 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 U2.1-201ENST00000618978 145 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 SCARNA4-201ENST00000629045 128 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 AC243829.7-201ENST00000633081 225 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 MIR7157-201ENST00000635801 60 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
VPS53Q5VIR6 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
VPS53Q5VIR6 AC233981.2-201ENST00000611524 1614 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS53Q5VIR6 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS53Q5VIR6 RNU6-1286P-201ENST00000383871 107 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 SNORA69.1-201ENST00000390904 137 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 RPL21P75-201ENST00000396599 483 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 RPL21P28-201ENST00000401418 483 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 MIR1252-201ENST00000408861 65 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 MTCO3P19-201ENST00000415864 321 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 AL358453.1-201ENST00000422522 250 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 MICF-203ENST00000432679 129 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 AL445687.1-201ENST00000439946 251 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS53Q5VIR6 RPL21P39-201ENST00000463605 483 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 MTATP8P1-201ENST00000467115 207 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 AC087190.1-201ENST00000484462 480 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.07□□□□□ -1.92
VPS53Q5VIR6 AC093591.1-201ENST00000491435 481 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 RPL21P16-201ENST00000495531 483 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.07□□□□□ -1.92
VPS53Q5VIR6 AC096725.1-201ENST00000514266 313 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 SNORA31.6-201ENST00000516241 130 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 RNU6-826P-201ENST00000516827 104 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 AC040926.1-201ENST00000530195 238 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
VPS53Q5VIR6 AC008269.2-201ENST00000561915 1105 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 AC090616.3-201ENST00000582184 217 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 MIR5092-201ENST00000583139 88 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 AC124312.5-201ENST00000604451 268 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 RPL23AP88-201ENST00000605759 454 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
VPS53Q5VIR6 AL021879.1-201ENST00000611756 288 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 MIR6852-201ENST00000621699 66 ntBASIC3.07□□□□□ -1.92
VPS53Q5VIR6 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS53Q5VIR6 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
VPS53Q5VIR6 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.06□□□□□ -1.92
VPS53Q5VIR6 Y_RNA.106-201ENST00000363189 100 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 Y_RNA.152-201ENST00000363578 100 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 Y_RNA.176-201ENST00000363815 109 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 RNY3P11-201ENST00000364153 102 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 RNU6-1141P-201ENST00000364520 107 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 RNU6-968P-201ENST00000384076 107 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 RNU6-622P-201ENST00000384272 103 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 MIR568-201ENST00000385036 95 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 Y_RNA.592-201ENST00000410274 109 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 RN7SKP61-201ENST00000410642 295 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 DPH3P2-201ENST00000422618 250 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 AC012308.1-201ENST00000451232 178 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 RPL22P13-201ENST00000493291 347 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 RNA5SP320-201ENST00000516263 124 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 Y_RNA.706-201ENST00000516933 99 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 Y_RNA.715-201ENST00000517082 110 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 AC091144.1-201ENST00000519573 138 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.06□□□□□ -1.92
VPS53Q5VIR6 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS53Q5VIR6 AC027176.1-201ENST00000560204 514 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 MIR4765-201ENST00000585007 77 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 AL356280.1-201ENST00000603614 379 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 AL359854.1-201ENST00000614203 1594 ntBASIC3.06□□□□□ -1.92
VPS53Q5VIR6 TTK-211ENST00000627129 240 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS53Q5VIR6 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS53Q5VIR6 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
VPS53Q5VIR6 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VPS53Q5VIR6 AC007336.1-201ENST00000576365 3828 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS53Q5VIR6 RNU6-874P-201ENST00000362390 105 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 RNA5SP68-201ENST00000363885 119 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 SNORD115-32-201ENST00000364079 82 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 SNORA25.6-201ENST00000364121 118 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 RNU6-450P-201ENST00000364654 107 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 SNORA63.7-201ENST00000365579 123 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 Y_RNA.405-201ENST00000383979 100 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 RNU6-142P-201ENST00000384019 107 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 Y_RNA.451-201ENST00000384200 100 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 Y_RNA.524-201ENST00000384564 100 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 RNU6-1222P-201ENST00000384615 107 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 Y_RNA.561-201ENST00000384694 100 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 MIR544A-201ENST00000384855 91 ntBASIC3.05□□□□□ -1.92
VPS53Q5VIR6 HMGN2P35-201ENST00000412164 270 ntBASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 123.8 ms