Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RNU6-1274P-201ENST00000384557 107 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 Y_RNA.533-201ENST00000384596 114 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 MIR549A-201ENST00000385268 96 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 CBX3P9-201ENST00000402326 552 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 SNORD23.1-201ENST00000408212 104 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 RNA5SP21-201ENST00000410917 96 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 HMGB3P2-201ENST00000411913 584 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 AL353997.1-201ENST00000432936 108 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 DAP3P1-201ENST00000441522 278 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 MIR449C-201ENST00000516047 92 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 Y_RNA.691-201ENST00000516611 103 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 AC121758.2-201ENST00000553271 193 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 FRG2DP-202ENST00000566967 323 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 AL355375.2-201ENST00000574825 175 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 AC011494.1-201ENST00000596454 237 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 AC018462.2-201ENST00000605375 395 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 AL132765.2-201ENST00000610812 351 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 AL008636.1-201ENST00000625038 1018 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 RNU6-1159P-201ENST00000362933 107 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 SNORD50.1-201ENST00000362987 71 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 Y_RNA.140-201ENST00000363474 103 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 RNU6-944P-201ENST00000364023 107 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 RNU4-56P-201ENST00000364700 142 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 Y_RNA.404-201ENST00000383978 102 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 Y_RNA.482-201ENST00000384377 111 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 MIR144-201ENST00000384886 86 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 MIR208B-201ENST00000401172 77 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 AL591034.2-201ENST00000402839 359 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 Y_RNA.597-201ENST00000410463 100 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 RNA5SP494-201ENST00000410653 129 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 RNA5SP270-201ENST00000411361 118 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 RPL23AP95-201ENST00000426806 265 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 AC078809.1-201ENST00000427601 140 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 RPS12P2-201ENST00000439728 269 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 IPO7P1-201ENST00000442031 636 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 RPL30P15-201ENST00000457129 321 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 snoU13.14-201ENST00000459372 104 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 RNA5SP384-201ENST00000516615 116 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 Y_RNA.708-201ENST00000516950 96 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 IGLV3-17-201ENST00000519099 244 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 MIR4781-201ENST00000585250 76 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 Z98751.3-201ENST00000604447 521 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 CTSLP2-204ENST00000629029 392 ntBASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
PDLIM3Q53GG5 MTND5P9-201ENST00000503854 1755 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 RNU4-15P-201ENST00000362613 141 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 RNU1-23P-201ENST00000363361 144 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 RNA5SP240-201ENST00000365355 128 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 Y_RNA.384-201ENST00000383909 102 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 Y_RNA.474-201ENST00000384341 102 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 MIR489-201ENST00000384923 84 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 MIR7-2-201ENST00000384970 110 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 MIR487A-201ENST00000385009 80 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 RNA5SP210-201ENST00000391034 120 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 SNORA75.4-201ENST00000391278 119 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 AL355497.1-201ENST00000406262 551 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 RN7SKP61-201ENST00000410642 295 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 RNU4-53P-201ENST00000410828 140 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 AL445305.1-201ENST00000432577 575 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 Z82188.1-201ENST00000436709 154 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 AL161788.1-201ENST00000441805 169 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 AC068781.1-201ENST00000488231 618 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 RNU6-120P-201ENST00000516077 103 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 MIR5694-201ENST00000581190 76 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 MIR4635-201ENST00000583759 79 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 MIR4795-201ENST00000584182 89 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 AC113139.1-201ENST00000605049 239 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 AL669831.3-213ENST00000636676 183 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 AL450472.1-202ENST00000637286 180 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 KPNA2P1-201ENST00000458289 1591 ntBASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
PDLIM3Q53GG5 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.12□□□□□ -2.07
PDLIM3Q53GG5 AC092268.1-201ENST00000342691 405 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 150.5 ms