Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 HSBP1P1-201ENST00000555205 166 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 COX6CP3-201ENST00000580869 223 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 AL138889.2-201ENST00000603883 242 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 MTND4LP5-201ENST00000605152 292 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
COL4A4P53420 Y_RNA.36-201ENST00000362602 112 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 RNU6-288P-201ENST00000363690 104 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 Y_RNA.205-201ENST00000364128 113 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 RNU1-115P-201ENST00000365329 160 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 RNU6-53P-201ENST00000365367 106 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 Y_RNA.396-201ENST00000383949 103 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 RNU6-890P-201ENST00000384121 107 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 SNORA75.6-201ENST00000391318 127 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 NDUFS5P1-201ENST00000405668 289 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 RNU2-23P-201ENST00000410545 195 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 RNU6-516P-201ENST00000411381 104 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 ELOCP20-201ENST00000422460 345 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 AC004383.1-201ENST00000438135 289 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 SUMO1P3-201ENST00000439961 304 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 AC073910.1-201ENST00000445047 438 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 FCF1P4-201ENST00000448326 183 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 AL031274.1-201ENST00000450334 232 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 MTCO3P8-201ENST00000453691 755 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 AL353752.1-201ENST00000454946 260 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 MIR2053-201ENST00000459295 91 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 AC117503.1-201ENST00000472241 394 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 AC011005.2-201ENST00000487324 359 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 RNY3P15-201ENST00000516297 97 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 RNU2-58P-201ENST00000516403 183 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 Y_RNA.680-201ENST00000516441 93 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 SCARNA16.2-201ENST00000516520 172 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 SNORA40.14-201ENST00000516543 86 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 AC131281.1-201ENST00000522984 164 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 DEFB108D-201ENST00000527787 222 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
COL4A4P53420 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.85□□□□□ -2.11
COL4A4P53420 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.85□□□□□ -2.11
COL4A4P53420 AL355812.1-201ENST00000603215 216 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 AL645939.4-201ENST00000604495 135 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 AL161423.1-201ENST00000613700 262 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 AL359547.2-201ENST00000615810 418 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 MIR8062-201ENST00000621515 85 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.85□□□□□ -2.11
COL4A4P53420 FO624990.1-201ENST00000636373 85 ntBASIC1.85□□□□□ -2.11
COL4A4P53420 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.85□□□□□ -2.11
COL4A4P53420 AL391987.6-201ENST00000305671 199 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 Y_RNA.14-201ENST00000362415 103 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 Y_RNA.26-201ENST00000362539 101 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 RNA5SP391-201ENST00000363456 119 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 RNU6-806P-201ENST00000365147 105 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 Y_RNA.380-201ENST00000365663 111 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
COL4A4P53420 RNU6-1062P-201ENST00000383908 107 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 RNU6-1293P-201ENST00000384077 107 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 RNU6-842P-201ENST00000384269 107 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 Y_RNA.577-201ENST00000384794 101 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 MT-TW-201ENST00000387382 68 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 AL136372.1-201ENST00000403060 228 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 SUMO2P12-201ENST00000405924 140 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 MIR1302-6-201ENST00000408466 90 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 RNA5SP489-201ENST00000410986 109 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.84□□□□□ -2.11
COL4A4P53420 AC099677.1-201ENST00000420575 175 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 AC139712.2-201ENST00000424302 339 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC1.84□□□□□ -2.11
COL4A4P53420 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC1.84□□□□□ -2.11
COL4A4P53420 RPS15AP7-201ENST00000439294 405 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 RNU1-123P-201ENST00000458950 160 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 SNRPGP3-201ENST00000469405 227 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 RPS23P3-201ENST00000470993 430 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 RPL30P11-201ENST00000495304 339 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC1.84□□□□□ -2.11
COL4A4P53420 ATP5EP1-201ENST00000510257 156 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 RNU6-406P-201ENST00000516470 107 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 RNU6-1016P-201ENST00000516689 94 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 RNU6-307P-201ENST00000516743 106 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.84□□□□□ -2.11
COL4A4P53420 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.84□□□□□ -2.11
COL4A4P53420 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.84□□□□□ -2.11
COL4A4P53420 AC007375.1-201ENST00000554513 578 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC1.84□□□□□ -2.11
COL4A4P53420 MIR3128-201ENST00000581957 66 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 AL078603.1-201ENST00000603824 313 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 AL355810.1-201ENST00000614629 552 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 SDR42E1P2-201ENST00000614861 481 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 SDR42E1P4-201ENST00000620894 481 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 RNU6-156P-201ENST00000621869 107 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 AC091925.2-201ENST00000625059 256 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 AC110774.1-201ENST00000623567 2018 ntBASIC1.84□□□□□ -2.11
COL4A4P53420 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC1.84□□□□□ -2.11
COL4A4P53420 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.84□□□□□ -2.11
COL4A4P53420 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
COL4A4P53420 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
COL4A4P53420 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.84□□□□□ -2.12
COL4A4P53420 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC1.84□□□□□ -2.12
COL4A4P53420 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC1.84□□□□□ -2.12
COL4A4P53420 DDX10P1-201ENST00000448545 1933 ntBASIC1.84□□□□□ -2.12
COL4A4P53420 Y_RNA.30-201ENST00000362572 97 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 Y_RNA.314-201ENST00000365114 102 ntBASIC1.83□□□□□ -2.12
COL4A4P53420 RNU6-209P-201ENST00000384118 107 ntBASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms