Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RN7SL504P-201ENST00000494496 287 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 RNU7-175P-201ENST00000515915 61 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 Y_RNA.706-201ENST00000516933 99 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 SCARNA11.3-201ENST00000517276 130 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 AL442663.2-201ENST00000554385 511 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 AC021231.3-201ENST00000558497 370 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 AC104581.2-201ENST00000572227 430 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 AC006600.1-201ENST00000572529 153 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 MIR4680-201ENST00000580906 66 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 AC090616.3-201ENST00000582184 217 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 AL356157.2-201ENST00000605122 111 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 AC090517.3-201ENST00000625170 141 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.26□□□□□ -2.05
HOXA1P49639 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.25□□□□□ -2.05
HOXA1P49639 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.25□□□□□ -2.05
HOXA1P49639 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
HOXA1P49639 OR56A5-201ENST00000340110 738 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 RNU6-1210P-201ENST00000363775 107 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 SNORD46.1-201ENST00000364139 104 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 SNORA68.1-201ENST00000364537 132 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 SET-203ENST00000372688 801 ntTSL 2 BASIC2.25□□□□□ -2.05
HOXA1P49639 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.25□□□□□ -2.05
HOXA1P49639 Y_RNA.557-201ENST00000384680 107 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 MIR625-201ENST00000385047 85 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
HOXA1P49639 RNA5SP171-201ENST00000391071 115 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 MIR208B-201ENST00000401172 77 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 CBX3P9-201ENST00000402326 552 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.25□□□□□ -2.05
HOXA1P49639 CYCSP48-201ENST00000417124 323 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC2.25□□□□□ -2.05
HOXA1P49639 HMGN1P10-201ENST00000474557 553 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 RPL22P13-201ENST00000493291 347 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 AC145146.1-201ENST00000496370 254 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 RNA5SP112-201ENST00000515937 99 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 AC115990.1-201ENST00000526957 301 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 HSBP1P1-201ENST00000555205 166 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 MIR5188-201ENST00000583467 113 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 MIR5195-201ENST00000583555 115 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2.25□□□□□ -2.05
HOXA1P49639 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.25□□□□□ -2.05
HOXA1P49639 AC104695.3-201ENST00000604052 296 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 YPEL5P2-201ENST00000605553 359 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 AC100812.1-201ENST00000607622 580 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.25□□□□□ -2.05
HOXA1P49639 AL606534.2-204ENST00000635008 178 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 AC092593.1-201ENST00000515413 1815 ntBASIC2.25□□□□□ -2.05
HOXA1P49639 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.25□□□□□ -2.05
HOXA1P49639 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
HOXA1P49639 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.25□□□□□ -2.05
HOXA1P49639 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
HOXA1P49639 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
HOXA1P49639 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
HOXA1P49639 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.24□□□□□ -2.05
HOXA1P49639 RNU6-17P-201ENST00000384245 107 ntBASIC2.24□□□□□ -2.05
HOXA1P49639 RNU6-18P-201ENST00000384527 107 ntBASIC2.24□□□□□ -2.05
HOXA1P49639 SNORA69.1-201ENST00000390904 137 ntBASIC2.24□□□□□ -2.05
HOXA1P49639 RNU6-1093P-201ENST00000391194 107 ntBASIC2.24□□□□□ -2.05
HOXA1P49639 Y_RNA.592-201ENST00000410274 109 ntBASIC2.24□□□□□ -2.05
HOXA1P49639 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.24□□□□□ -2.05
HOXA1P49639 CEP57L1P1-201ENST00000430943 1201 ntBASIC2.24□□□□□ -2.05
HOXA1P49639 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.24□□□□□ -2.05
HOXA1P49639 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.24□□□□□ -2.05
HOXA1P49639 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.24□□□□□ -2.05
HOXA1P49639 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.24□□□□□ -2.05
HOXA1P49639 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.24□□□□□ -2.05
HOXA1P49639 SRIP1-201ENST00000489235 288 ntBASIC2.24□□□□□ -2.05
HOXA1P49639 AC079804.2-201ENST00000490376 200 ntBASIC2.24□□□□□ -2.05
HOXA1P49639 AC083906.5-201ENST00000503722 328 ntBASIC2.24□□□□□ -2.05
HOXA1P49639 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.24□□□□□ -2.05
HOXA1P49639 SNORA25.10-201ENST00000515926 124 ntBASIC2.24□□□□□ -2.05
HOXA1P49639 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
HOXA1P49639 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.24□□□□□ -2.05
HOXA1P49639 AC027288.2-201ENST00000553028 243 ntBASIC2.24□□□□□ -2.05
HOXA1P49639 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.24□□□□□ -2.05
HOXA1P49639 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.24□□□□□ -2.05
HOXA1P49639 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.24□□□□□ -2.05
HOXA1P49639 7SK.7-201ENST00000603504 247 ntBASIC2.24□□□□□ -2.05
HOXA1P49639 AC116312.1-201ENST00000606841 314 ntBASIC2.24□□□□□ -2.05
HOXA1P49639 MIR6840-201ENST00000611937 71 ntBASIC2.24□□□□□ -2.05
HOXA1P49639 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.24□□□□□ -2.05
HOXA1P49639 AP000560.1-201ENST00000624150 1937 ntBASIC2.24□□□□□ -2.05
HOXA1P49639 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
HOXA1P49639 AC005336.3-201ENST00000623833 2679 ntBASIC2.24□□□□□ -2.05
HOXA1P49639 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
HOXA1P49639 AC096644.4-201ENST00000563417 2912 ntBASIC2.23□□□□□ -2.05
HOXA1P49639 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.23□□□□□ -2.05
HOXA1P49639 Y_RNA.39-201ENST00000362620 98 ntBASIC2.23□□□□□ -2.05
HOXA1P49639 RNU1-115P-201ENST00000365329 160 ntBASIC2.23□□□□□ -2.05
HOXA1P49639 SNORA6-201ENST00000384033 151 ntBASIC2.23□□□□□ -2.05
HOXA1P49639 RNU6-639P-201ENST00000384074 107 ntBASIC2.23□□□□□ -2.05
HOXA1P49639 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.23□□□□□ -2.05
HOXA1P49639 WARS2P1-201ENST00000429678 537 ntBASIC2.23□□□□□ -2.05
HOXA1P49639 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.23□□□□□ -2.05
HOXA1P49639 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.23□□□□□ -2.05
HOXA1P49639 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.23□□□□□ -2.05
HOXA1P49639 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.23□□□□□ -2.05
HOXA1P49639 RNU6-327P-201ENST00000516270 127 ntBASIC2.23□□□□□ -2.05
HOXA1P49639 RNU6-1046P-201ENST00000516538 107 ntBASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms