Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RNU6-966P-201ENST00000516479 104 ntBASIC3.17□□□□□ -1.9
MSX2P35548 SNORA27.4-201ENST00000516650 95 ntBASIC3.17□□□□□ -1.9
MSX2P35548 SNORA31.21-201ENST00000517180 77 ntBASIC3.17□□□□□ -1.9
MSX2P35548 AC006199.1-201ENST00000548728 219 ntBASIC3.17□□□□□ -1.9
MSX2P35548 AC090897.2-201ENST00000581715 130 ntBASIC3.17□□□□□ -1.9
MSX2P35548 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.17□□□□□ -1.9
MSX2P35548 MIR3529-201ENST00000637713 78 ntBASIC3.17□□□□□ -1.9
MSX2P35548 AC017071.1-201ENST00000564407 2204 ntBASIC3.17□□□□□ -1.9
MSX2P35548 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.17□□□□□ -1.9
MSX2P35548 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
MSX2P35548 AC110491.1-201ENST00000562191 2010 ntBASIC3.17□□□□□ -1.9
MSX2P35548 AL109809.4-201ENST00000603520 2185 ntBASIC3.17□□□□□ -1.9
MSX2P35548 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.16□□□□□ -1.9
MSX2P35548 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
MSX2P35548 AC093010.3-201ENST00000570269 15214 ntBASIC3.16□□□□□ -1.9
MSX2P35548 RNU6-1159P-201ENST00000362933 107 ntBASIC3.16□□□□□ -1.9
MSX2P35548 Y_RNA.331-201ENST00000365267 102 ntBASIC3.16□□□□□ -1.9
MSX2P35548 Y_RNA.333-201ENST00000365274 102 ntBASIC3.16□□□□□ -1.9
MSX2P35548 Y_RNA.383-201ENST00000383855 97 ntBASIC3.16□□□□□ -1.9
MSX2P35548 RNU6-514P-201ENST00000384208 107 ntBASIC3.16□□□□□ -1.9
MSX2P35548 RNU6-1289P-201ENST00000384431 106 ntBASIC3.16□□□□□ -1.9
MSX2P35548 U8.11-201ENST00000384699 133 ntBASIC3.16□□□□□ -1.9
MSX2P35548 U8.12-201ENST00000384701 133 ntBASIC3.16□□□□□ -1.9
MSX2P35548 RNU6-918P-201ENST00000391219 106 ntBASIC3.16□□□□□ -1.9
MSX2P35548 AC138623.1-201ENST00000418060 216 ntBASIC3.16□□□□□ -1.9
MSX2P35548 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.16□□□□□ -1.9
MSX2P35548 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
MSX2P35548 AC012306.1-201ENST00000423267 114 ntBASIC3.16□□□□□ -1.9
MSX2P35548 AL365496.1-201ENST00000426885 215 ntBASIC3.16□□□□□ -1.9
MSX2P35548 RPL39P29-201ENST00000447779 157 ntBASIC3.16□□□□□ -1.9
MSX2P35548 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC3.16□□□□□ -1.9
MSX2P35548 AC007395.1-201ENST00000451333 677 ntBASIC3.16□□□□□ -1.9
MSX2P35548 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.16□□□□□ -1.9
MSX2P35548 U8.18-201ENST00000459285 133 ntBASIC3.16□□□□□ -1.9
MSX2P35548 AC109925.1-201ENST00000478069 331 ntBASIC3.16□□□□□ -1.9
MSX2P35548 AC006483.1-201ENST00000487308 313 ntBASIC3.16□□□□□ -1.9
MSX2P35548 Y_RNA.679-201ENST00000516416 91 ntBASIC3.16□□□□□ -1.9
MSX2P35548 AC233702.2-202ENST00000562547 291 ntBASIC3.16□□□□□ -1.9
MSX2P35548 MIR3944-201ENST00000581277 108 ntBASIC3.16□□□□□ -1.9
MSX2P35548 AC005176.2-201ENST00000596933 147 ntBASIC3.16□□□□□ -1.9
MSX2P35548 AC008739.3-201ENST00000603262 127 ntBASIC3.16□□□□□ -1.9
MSX2P35548 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.16□□□□□ -1.9
MSX2P35548 AC073476.4-201ENST00000628409 72 ntBASIC3.16□□□□□ -1.9
MSX2P35548 AC021753.1-201ENST00000635724 168 ntBASIC3.16□□□□□ -1.9
MSX2P35548 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.16□□□□□ -1.9
MSX2P35548 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.16□□□□□ -1.9
MSX2P35548 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
MSX2P35548 AC093831.2-201ENST00000624393 3427 ntBASIC3.16□□□□□ -1.9
MSX2P35548 AC091564.4-201ENST00000533934 2194 ntBASIC3.15□□□□□ -1.9
MSX2P35548 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.15□□□□□ -1.9
MSX2P35548 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.15□□□□□ -1.9
MSX2P35548 RBBP8P1-201ENST00000449447 1844 ntBASIC3.15□□□□□ -1.91
MSX2P35548 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
MSX2P35548 MIR208A-201ENST00000362287 71 ntBASIC3.15□□□□□ -1.91
MSX2P35548 SNORA71.3-201ENST00000362582 128 ntBASIC3.15□□□□□ -1.91
MSX2P35548 RNA5SP119-201ENST00000362715 117 ntBASIC3.15□□□□□ -1.91
MSX2P35548 Y_RNA.170-201ENST00000363746 110 ntBASIC3.15□□□□□ -1.91
MSX2P35548 SNORD46.1-201ENST00000364139 104 ntBASIC3.15□□□□□ -1.91
MSX2P35548 RNU6-487P-201ENST00000365430 104 ntBASIC3.15□□□□□ -1.91
MSX2P35548 CD24P4-201ENST00000382840 243 ntBASIC3.15□□□□□ -1.91
MSX2P35548 SNORA46.1-201ENST00000391069 153 ntBASIC3.15□□□□□ -1.91
MSX2P35548 RNA5SP390-201ENST00000410191 113 ntBASIC3.15□□□□□ -1.91
MSX2P35548 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.15□□□□□ -1.91
MSX2P35548 AC005300.1-201ENST00000428401 373 ntBASIC3.15□□□□□ -1.91
MSX2P35548 YME1L1P1-201ENST00000429435 297 ntBASIC3.15□□□□□ -1.91
MSX2P35548 AC112220.1-201ENST00000434628 355 ntBASIC3.15□□□□□ -1.91
MSX2P35548 CST9LP2-201ENST00000437612 320 ntBASIC3.15□□□□□ -1.91
MSX2P35548 POLR2KP2-201ENST00000438155 177 ntBASIC3.15□□□□□ -1.91
MSX2P35548 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.15□□□□□ -1.91
MSX2P35548 RN7SL75P-201ENST00000461926 281 ntBASIC3.15□□□□□ -1.91
MSX2P35548 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC3.15□□□□□ -1.91
MSX2P35548 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.15□□□□□ -1.91
MSX2P35548 RNA5SP217-201ENST00000515959 91 ntBASIC3.15□□□□□ -1.91
MSX2P35548 SNORA31.16-201ENST00000516773 139 ntBASIC3.15□□□□□ -1.91
MSX2P35548 RNA5SP54-201ENST00000516951 92 ntBASIC3.15□□□□□ -1.91
MSX2P35548 ACA59.2-201ENST00000517061 156 ntBASIC3.15□□□□□ -1.91
MSX2P35548 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.15□□□□□ -1.91
MSX2P35548 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3.15□□□□□ -1.91
MSX2P35548 AC022441.3-201ENST00000605737 136 ntBASIC3.15□□□□□ -1.91
MSX2P35548 AC010999.1-201ENST00000611856 324 ntBASIC3.15□□□□□ -1.91
MSX2P35548 AC006001.4-201ENST00000622243 395 ntBASIC3.15□□□□□ -1.91
MSX2P35548 U6.106-201ENST00000636360 105 ntBASIC3.15□□□□□ -1.91
MSX2P35548 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.15□□□□□ -1.91
MSX2P35548 AL356274.2-201ENST00000624379 3752 ntBASIC3.15□□□□□ -1.91
MSX2P35548 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.15□□□□□ -1.91
MSX2P35548 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
MSX2P35548 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
MSX2P35548 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
MSX2P35548 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
MSX2P35548 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
MSX2P35548 RNU1-70P-201ENST00000362618 164 ntBASIC3.14□□□□□ -1.91
MSX2P35548 Y_RNA.217-201ENST00000364214 105 ntBASIC3.14□□□□□ -1.91
MSX2P35548 Y_RNA.233-201ENST00000364407 101 ntBASIC3.14□□□□□ -1.91
MSX2P35548 SNORD113-1-201ENST00000365321 69 ntBASIC3.14□□□□□ -1.91
MSX2P35548 Y_RNA.595-201ENST00000410403 105 ntBASIC3.14□□□□□ -1.91
MSX2P35548 RPL23AP36-201ENST00000413895 458 ntBASIC3.14□□□□□ -1.91
MSX2P35548 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.14□□□□□ -1.91
MSX2P35548 AC009237.7-201ENST00000447357 229 ntBASIC3.14□□□□□ -1.91
MSX2P35548 UQCRBP2-201ENST00000447827 297 ntBASIC3.14□□□□□ -1.91
MSX2P35548 Y_RNA.641-201ENST00000459414 105 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 136.2 ms