Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MIR6504-201ENST00000613520 61 ntBASIC1.2□□□□□ -2.22
USF1P22415 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.2□□□□□ -2.22
USF1P22415 AC091304.6-201ENST00000619761 202 ntBASIC1.2□□□□□ -2.22
USF1P22415 AC136475.10-201ENST00000620253 385 ntBASIC1.2□□□□□ -2.22
USF1P22415 AC091931.1-201ENST00000623488 728 ntBASIC1.2□□□□□ -2.22
USF1P22415 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.2□□□□□ -2.22
USF1P22415 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.2□□□□□ -2.22
USF1P22415 AL159152.1-201ENST00000635019 2587 ntBASIC1.19□□□□□ -2.22
USF1P22415 RNU1-76P-201ENST00000362903 159 ntBASIC1.19□□□□□ -2.22
USF1P22415 RNU6-1120P-201ENST00000362988 108 ntBASIC1.19□□□□□ -2.22
USF1P22415 RNU6-1026P-201ENST00000384465 108 ntBASIC1.19□□□□□ -2.22
USF1P22415 MIR520A-201ENST00000384862 85 ntBASIC1.19□□□□□ -2.22
USF1P22415 MTCO1P21-201ENST00000416634 589 ntBASIC1.19□□□□□ -2.22
USF1P22415 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.19□□□□□ -2.22
USF1P22415 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.19□□□□□ -2.22
USF1P22415 C8orf59P1-201ENST00000429930 303 ntBASIC1.19□□□□□ -2.22
USF1P22415 MTND4P32-201ENST00000437189 1237 ntBASIC1.19□□□□□ -2.22
USF1P22415 JTBP1-201ENST00000441314 247 ntBASIC1.19□□□□□ -2.22
USF1P22415 ATP5J2P3-201ENST00000451550 258 ntBASIC1.19□□□□□ -2.22
USF1P22415 C1DP4-201ENST00000455429 424 ntBASIC1.19□□□□□ -2.22
USF1P22415 RPL9P9-202ENST00000466501 579 ntBASIC1.19□□□□□ -2.22
USF1P22415 FO393415.2-201ENST00000480085 343 ntBASIC1.19□□□□□ -2.22
USF1P22415 RPL36AP21-201ENST00000490372 323 ntBASIC1.19□□□□□ -2.22
USF1P22415 RPS23P5-201ENST00000495419 428 ntBASIC1.19□□□□□ -2.22
USF1P22415 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC1.19□□□□□ -2.22
USF1P22415 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC1.19□□□□□ -2.22
USF1P22415 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.19□□□□□ -2.22
USF1P22415 AC008269.2-201ENST00000561915 1105 ntBASIC1.19□□□□□ -2.22
USF1P22415 MIR3913-1-201ENST00000577744 102 ntBASIC1.19□□□□□ -2.22
USF1P22415 AC025449.1-201ENST00000603896 529 ntBASIC1.19□□□□□ -2.22
USF1P22415 AC069114.2-201ENST00000604699 304 ntBASIC1.19□□□□□ -2.22
USF1P22415 AP001485.1-201ENST00000604799 199 ntBASIC1.19□□□□□ -2.22
USF1P22415 PRR13P7-201ENST00000605538 430 ntBASIC1.19□□□□□ -2.22
USF1P22415 AC083806.3-201ENST00000614016 455 ntBASIC1.19□□□□□ -2.22
USF1P22415 AC091895.1-201ENST00000624494 256 ntBASIC1.19□□□□□ -2.22
USF1P22415 AC027514.1-201ENST00000588561 1603 ntBASIC1.18□□□□□ -2.22
USF1P22415 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
USF1P22415 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.18□□□□□ -2.22
USF1P22415 U8.1-201ENST00000362843 134 ntBASIC1.18□□□□□ -2.22
USF1P22415 RNU6-271P-201ENST00000363858 105 ntBASIC1.18□□□□□ -2.22
USF1P22415 RNU6-517P-201ENST00000384362 110 ntBASIC1.18□□□□□ -2.22
USF1P22415 RNU6-903P-201ENST00000391270 109 ntBASIC1.18□□□□□ -2.22
USF1P22415 MIR208B-201ENST00000401172 77 ntBASIC1.18□□□□□ -2.22
USF1P22415 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.18□□□□□ -2.22
USF1P22415 AC012306.1-201ENST00000423267 114 ntBASIC1.18□□□□□ -2.22
USF1P22415 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.18□□□□□ -2.22
USF1P22415 HSPE1P9-201ENST00000440046 311 ntBASIC1.18□□□□□ -2.22
USF1P22415 MTND1P27-201ENST00000451117 902 ntBASIC1.18□□□□□ -2.22
USF1P22415 RPS29P23-201ENST00000458635 123 ntBASIC1.18□□□□□ -2.22
USF1P22415 RNU1-123P-201ENST00000458950 160 ntBASIC1.18□□□□□ -2.22
USF1P22415 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC1.18□□□□□ -2.22
USF1P22415 AC079140.3-201ENST00000511111 550 ntBASIC1.18□□□□□ -2.22
USF1P22415 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.18□□□□□ -2.22
USF1P22415 AC090517.1-201ENST00000569307 266 ntBASIC1.18□□□□□ -2.22
USF1P22415 MTATP6P24-201ENST00000576835 677 ntBASIC1.18□□□□□ -2.22
USF1P22415 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.18□□□□□ -2.22
USF1P22415 RNU6-85P-201ENST00000605989 107 ntBASIC1.18□□□□□ -2.22
USF1P22415 AC008536.2-201ENST00000607284 349 ntBASIC1.18□□□□□ -2.22
USF1P22415 AC109347.2-201ENST00000610220 349 ntBASIC1.18□□□□□ -2.22
USF1P22415 AC023510.2-201ENST00000622162 746 ntBASIC1.18□□□□□ -2.22
USF1P22415 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.18□□□□□ -2.22
USF1P22415 MTND5P10-201ENST00000603719 1809 ntBASIC1.17□□□□□ -2.22
USF1P22415 AC010615.1-201ENST00000594254 1764 ntBASIC1.17□□□□□ -2.22
USF1P22415 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
USF1P22415 MIR26B-201ENST00000362251 77 ntBASIC1.17□□□□□ -2.22
USF1P22415 Y_RNA.132-201ENST00000363421 102 ntBASIC1.17□□□□□ -2.22
USF1P22415 Y_RNA.796-201ENST00000364268 102 ntBASIC1.17□□□□□ -2.22
USF1P22415 Y_RNA.255-201ENST00000364581 97 ntBASIC1.17□□□□□ -2.22
USF1P22415 Y_RNA.799-201ENST00000364992 102 ntBASIC1.17□□□□□ -2.22
USF1P22415 SNORA36A-201ENST00000384221 132 ntBASIC1.17□□□□□ -2.22
USF1P22415 RNU6-1106P-201ENST00000390845 107 ntBASIC1.17□□□□□ -2.22
USF1P22415 MTATP6P18-201ENST00000417994 673 ntBASIC1.17□□□□□ -2.22
USF1P22415 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC1.17□□□□□ -2.22
USF1P22415 RPL30P13-201ENST00000418873 348 ntBASIC1.17□□□□□ -2.22
USF1P22415 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.17□□□□□ -2.22
USF1P22415 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.17□□□□□ -2.22
USF1P22415 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.17□□□□□ -2.22
USF1P22415 MTCO2P11-201ENST00000431069 680 ntBASIC1.17□□□□□ -2.22
USF1P22415 AC099677.2-201ENST00000436385 175 ntBASIC1.17□□□□□ -2.22
USF1P22415 MTCO2P3-201ENST00000442543 421 ntBASIC1.17□□□□□ -2.22
USF1P22415 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.17□□□□□ -2.22
USF1P22415 AC010531.2-201ENST00000465012 153 ntBASIC1.17□□□□□ -2.22
USF1P22415 RNA5SP445-201ENST00000515889 115 ntBASIC1.17□□□□□ -2.22
USF1P22415 RNU6-902P-201ENST00000517212 91 ntBASIC1.17□□□□□ -2.22
USF1P22415 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.17□□□□□ -2.22
USF1P22415 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC1.17□□□□□ -2.22
USF1P22415 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
USF1P22415 AP005597.4-201ENST00000526762 229 ntBASIC1.17□□□□□ -2.22
USF1P22415 MIR4760-201ENST00000585040 80 ntBASIC1.17□□□□□ -2.22
USF1P22415 MIR7974-201ENST00000615835 79 ntBASIC1.17□□□□□ -2.22
USF1P22415 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.17□□□□□ -2.22
USF1P22415 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.17□□□□□ -2.22
USF1P22415 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
USF1P22415 SNORA43.4-201ENST00000629559 138 ntBASIC1.17□□□□□ -2.22
USF1P22415 RNU6-1019P-201ENST00000364424 107 ntBASIC1.16□□□□□ -2.22
USF1P22415 MIR150-201ENST00000385048 84 ntBASIC1.16□□□□□ -2.22
USF1P22415 RNU2-7P-201ENST00000410794 178 ntBASIC1.16□□□□□ -2.22
USF1P22415 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC1.16□□□□□ -2.22
USF1P22415 ARL5AP1-201ENST00000418991 388 ntBASIC1.16□□□□□ -2.22
USF1P22415 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 179.7 ms