Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 HMGB3P3-201ENST00000510526 400 ntBASIC2.29□□□□□ -2.04
MSH3P20585 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.29□□□□□ -2.04
MSH3P20585 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.29□□□□□ -2.04
MSH3P20585 RNU6-1170P-201ENST00000515974 106 ntBASIC2.29□□□□□ -2.04
MSH3P20585 RNU5F-2P-201ENST00000516066 82 ntBASIC2.29□□□□□ -2.04
MSH3P20585 RNA5SP281-201ENST00000516504 135 ntBASIC2.29□□□□□ -2.04
MSH3P20585 Y_RNA.701-201ENST00000516812 110 ntBASIC2.29□□□□□ -2.04
MSH3P20585 SCARNA3-201ENST00000517097 143 ntBASIC2.29□□□□□ -2.04
MSH3P20585 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.29□□□□□ -2.04
MSH3P20585 AP002770.2-201ENST00000543613 532 ntBASIC2.29□□□□□ -2.04
MSH3P20585 AC007375.1-201ENST00000554513 578 ntBASIC2.29□□□□□ -2.04
MSH3P20585 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.29□□□□□ -2.04
MSH3P20585 AC023824.2-201ENST00000566185 400 ntBASIC2.29□□□□□ -2.04
MSH3P20585 AC044792.1-201ENST00000593294 196 ntBASIC2.29□□□□□ -2.04
MSH3P20585 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.28□□□□□ -2.04
MSH3P20585 OR56A5-201ENST00000340110 738 ntBASIC2.28□□□□□ -2.04
MSH3P20585 RNU6-655P-201ENST00000362858 107 ntBASIC2.28□□□□□ -2.04
MSH3P20585 RNU5B-2P-201ENST00000363036 113 ntBASIC2.28□□□□□ -2.04
MSH3P20585 U3.13-201ENST00000364804 214 ntBASIC2.28□□□□□ -2.04
MSH3P20585 SNORD42.2-201ENST00000365570 69 ntBASIC2.28□□□□□ -2.04
MSH3P20585 RNU6-968P-201ENST00000384076 107 ntBASIC2.28□□□□□ -2.04
MSH3P20585 SNORA29-201ENST00000384183 140 ntBASIC2.28□□□□□ -2.04
MSH3P20585 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
MSH3P20585 RNU4-53P-201ENST00000410828 140 ntBASIC2.28□□□□□ -2.04
MSH3P20585 RNA5SP508-201ENST00000411327 119 ntBASIC2.28□□□□□ -2.04
MSH3P20585 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC2.28□□□□□ -2.04
MSH3P20585 MTND1P14-201ENST00000427400 950 ntBASIC2.28□□□□□ -2.04
MSH3P20585 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.28□□□□□ -2.04
MSH3P20585 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.28□□□□□ -2.04
MSH3P20585 GPM6BP3-201ENST00000442797 145 ntBASIC2.28□□□□□ -2.04
MSH3P20585 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.28□□□□□ -2.04
MSH3P20585 Y_RNA.639-201ENST00000458981 102 ntBASIC2.28□□□□□ -2.04
MSH3P20585 AL121594.1-201ENST00000475906 575 ntBASIC2.28□□□□□ -2.04
MSH3P20585 AC107222.1-201ENST00000510899 637 ntBASIC2.28□□□□□ -2.04
MSH3P20585 RNU6-470P-201ENST00000515954 104 ntBASIC2.28□□□□□ -2.04
MSH3P20585 RNU6-120P-201ENST00000516077 103 ntBASIC2.28□□□□□ -2.04
MSH3P20585 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.28□□□□□ -2.04
MSH3P20585 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.28□□□□□ -2.04
MSH3P20585 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.28□□□□□ -2.04
MSH3P20585 AP000889.1-201ENST00000530968 660 ntBASIC2.28□□□□□ -2.04
MSH3P20585 MIR5701-3-201ENST00000578890 82 ntBASIC2.28□□□□□ -2.04
MSH3P20585 MIR5007-201ENST00000583098 95 ntBASIC2.28□□□□□ -2.04
MSH3P20585 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.28□□□□□ -2.04
MSH3P20585 MIR4658-201ENST00000584344 65 ntBASIC2.28□□□□□ -2.04
MSH3P20585 MIR5701-1-201ENST00000585138 82 ntBASIC2.28□□□□□ -2.04
MSH3P20585 AL078605.1-201ENST00000603529 500 ntBASIC2.28□□□□□ -2.04
MSH3P20585 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.28□□□□□ -2.04
MSH3P20585 CYP2C61P-201ENST00000604072 290 ntBASIC2.28□□□□□ -2.04
MSH3P20585 MIR5701-2-201ENST00000615634 82 ntBASIC2.28□□□□□ -2.04
MSH3P20585 AC005336.3-201ENST00000623833 2679 ntBASIC2.28□□□□□ -2.04
MSH3P20585 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
MSH3P20585 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
MSH3P20585 AC233981.2-201ENST00000611524 1614 ntBASIC2.28□□□□□ -2.05
MSH3P20585 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.27□□□□□ -2.05
MSH3P20585 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
MSH3P20585 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
MSH3P20585 MIRLET7G-201ENST00000362280 84 ntBASIC2.27□□□□□ -2.05
MSH3P20585 RNY1P16-201ENST00000363063 111 ntBASIC2.27□□□□□ -2.05
MSH3P20585 Y_RNA.197-201ENST00000364004 102 ntBASIC2.27□□□□□ -2.05
MSH3P20585 RNU1-91P-201ENST00000364746 163 ntBASIC2.27□□□□□ -2.05
MSH3P20585 Y_RNA.395-201ENST00000383945 109 ntBASIC2.27□□□□□ -2.05
MSH3P20585 RNU6-1040P-201ENST00000383974 107 ntBASIC2.27□□□□□ -2.05
MSH3P20585 SNORA36A-201ENST00000384221 132 ntBASIC2.27□□□□□ -2.05
MSH3P20585 MIR559-201ENST00000385188 96 ntBASIC2.27□□□□□ -2.05
MSH3P20585 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.27□□□□□ -2.05
MSH3P20585 AL590135.1-201ENST00000422215 156 ntBASIC2.27□□□□□ -2.05
MSH3P20585 AC019205.3-201ENST00000424573 156 ntBASIC2.27□□□□□ -2.05
MSH3P20585 RPL30P4-201ENST00000429309 333 ntBASIC2.27□□□□□ -2.05
MSH3P20585 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.27□□□□□ -2.05
MSH3P20585 RPL23AP50-201ENST00000434149 455 ntBASIC2.27□□□□□ -2.05
MSH3P20585 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.27□□□□□ -2.05
MSH3P20585 AC016700.2-201ENST00000446011 156 ntBASIC2.27□□□□□ -2.05
MSH3P20585 AC068781.1-201ENST00000488231 618 ntBASIC2.27□□□□□ -2.05
MSH3P20585 RPL23AP75-201ENST00000491601 451 ntBASIC2.27□□□□□ -2.05
MSH3P20585 AC015911.1-201ENST00000495111 156 ntBASIC2.27□□□□□ -2.05
MSH3P20585 HMGB1P35-201ENST00000503360 598 ntBASIC2.27□□□□□ -2.05
MSH3P20585 AC022493.2-201ENST00000506122 481 ntBASIC2.27□□□□□ -2.05
MSH3P20585 RNU2-53P-201ENST00000516257 147 ntBASIC2.27□□□□□ -2.05
MSH3P20585 SNORA31.16-201ENST00000516773 139 ntBASIC2.27□□□□□ -2.05
MSH3P20585 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
MSH3P20585 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.27□□□□□ -2.05
MSH3P20585 AC021231.3-201ENST00000558497 370 ntBASIC2.27□□□□□ -2.05
MSH3P20585 MIR5694-201ENST00000581190 76 ntBASIC2.27□□□□□ -2.05
MSH3P20585 MIR3136-201ENST00000583498 78 ntBASIC2.27□□□□□ -2.05
MSH3P20585 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
MSH3P20585 AL080274.1-201ENST00000605565 220 ntBASIC2.27□□□□□ -2.05
MSH3P20585 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.27□□□□□ -2.05
MSH3P20585 AC090971.5-201ENST00000621102 293 ntBASIC2.27□□□□□ -2.05
MSH3P20585 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.27□□□□□ -2.05
MSH3P20585 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.27□□□□□ -2.05
MSH3P20585 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
MSH3P20585 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.27□□□□□ -2.05
MSH3P20585 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
MSH3P20585 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
MSH3P20585 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.26□□□□□ -2.05
MSH3P20585 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
MSH3P20585 RNU1-72P-201ENST00000362976 153 ntBASIC2.26□□□□□ -2.05
MSH3P20585 Y_RNA.138-201ENST00000363462 102 ntBASIC2.26□□□□□ -2.05
MSH3P20585 RNU6-1210P-201ENST00000363775 107 ntBASIC2.26□□□□□ -2.05
MSH3P20585 CBX3P9-201ENST00000402326 552 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 128.5 ms