Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 SRIP2-201ENST00000428470 166 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 TOMM22P6-201ENST00000465035 409 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 AC079804.2-201ENST00000490376 200 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 TRBVA-201ENST00000498804 316 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.79□□□□□ -2.12
FOXA2Q9Y261 AP005639.2-201ENST00000527592 928 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 AC087441.2-201ENST00000529141 262 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.79□□□□□ -2.12
FOXA2Q9Y261 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.79□□□□□ -2.12
FOXA2Q9Y261 MIR3169-201ENST00000578032 83 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.79□□□□□ -2.12
FOXA2Q9Y261 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 MIR6132-201ENST00000622083 109 ntBASIC1.79□□□□□ -2.12
FOXA2Q9Y261 KPNA2P1-201ENST00000458289 1591 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 RNU1-76P-201ENST00000362903 159 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 Y_RNA.132-201ENST00000363421 102 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 Y_RNA.256-201ENST00000364594 104 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 SNORA18.2-201ENST00000383865 132 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 SNORA48.3-201ENST00000391081 134 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 VN1R36P-201ENST00000414936 291 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 SNRPEP10-201ENST00000420249 274 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 AC027124.2-201ENST00000428249 105 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 AL589823.1-201ENST00000429577 183 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 USP9YP28-201ENST00000435142 589 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.78□□□□□ -2.12
FOXA2Q9Y261 AL353705.4-201ENST00000449661 238 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 RNU1-131P-201ENST00000458943 161 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 HMGN2P26-201ENST00000463169 339 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 AC008413.1-201ENST00000511864 177 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.78□□□□□ -2.12
FOXA2Q9Y261 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.78□□□□□ -2.12
FOXA2Q9Y261 MRPS36P4-201ENST00000534436 298 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 AC016957.1-201ENST00000534895 309 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.78□□□□□ -2.12
FOXA2Q9Y261 CPDP1-201ENST00000579660 283 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 FGF7P1-201ENST00000582820 288 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 CTHRC1P1-201ENST00000605383 469 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 AC104458.1-201ENST00000608243 463 ntBASIC1.78□□□□□ -2.12
FOXA2Q9Y261 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.78□□□□□ -2.12
FOXA2Q9Y261 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
FOXA2Q9Y261 SNORA48.1-201ENST00000390879 135 ntBASIC1.77□□□□□ -2.13
FOXA2Q9Y261 RNU6-332P-201ENST00000391193 108 ntBASIC1.77□□□□□ -2.13
FOXA2Q9Y261 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.77□□□□□ -2.13
FOXA2Q9Y261 AL356320.1-201ENST00000429616 163 ntBASIC1.77□□□□□ -2.13
FOXA2Q9Y261 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.77□□□□□ -2.13
FOXA2Q9Y261 AC130509.1-201ENST00000464158 433 ntBASIC1.77□□□□□ -2.13
FOXA2Q9Y261 AC090255.1-201ENST00000495779 349 ntBASIC1.77□□□□□ -2.13
FOXA2Q9Y261 RNA5SP200-201ENST00000516360 103 ntBASIC1.77□□□□□ -2.13
FOXA2Q9Y261 MIR4713-201ENST00000582691 75 ntBASIC1.77□□□□□ -2.13
FOXA2Q9Y261 AC005786.1-201ENST00000588553 154 ntBASIC1.77□□□□□ -2.13
FOXA2Q9Y261 MIR3976-201ENST00000606807 139 ntBASIC1.77□□□□□ -2.13
FOXA2Q9Y261 RMST_3.1-201ENST00000611651 109 ntBASIC1.77□□□□□ -2.13
FOXA2Q9Y261 AL590808.1-201ENST00000618696 141 ntBASIC1.77□□□□□ -2.13
FOXA2Q9Y261 RNU5B-2P-201ENST00000363036 113 ntBASIC1.76□□□□□ -2.13
FOXA2Q9Y261 XGY1-201ENST00000381172 446 ntBASIC1.76□□□□□ -2.13
FOXA2Q9Y261 RNU6-373P-201ENST00000411247 98 ntBASIC1.76□□□□□ -2.13
FOXA2Q9Y261 NCOR1P3-201ENST00000420479 303 ntBASIC1.76□□□□□ -2.13
FOXA2Q9Y261 AL645568.3-201ENST00000433683 316 ntBASIC1.76□□□□□ -2.13
FOXA2Q9Y261 AL353572.1-201ENST00000442490 417 ntBASIC1.76□□□□□ -2.13
FOXA2Q9Y261 AC007395.1-201ENST00000451333 677 ntBASIC1.76□□□□□ -2.13
FOXA2Q9Y261 AC016925.1-201ENST00000458303 298 ntBASIC1.76□□□□□ -2.13
FOXA2Q9Y261 RNU7-187P-201ENST00000458985 68 ntBASIC1.76□□□□□ -2.13
FOXA2Q9Y261 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.76□□□□□ -2.13
FOXA2Q9Y261 RNU6-720P-201ENST00000516363 108 ntBASIC1.76□□□□□ -2.13
FOXA2Q9Y261 SUMO2P18-201ENST00000518873 252 ntBASIC1.76□□□□□ -2.13
FOXA2Q9Y261 AP000889.1-201ENST00000530968 660 ntBASIC1.76□□□□□ -2.13
FOXA2Q9Y261 EIF1P4-201ENST00000572664 335 ntBASIC1.76□□□□□ -2.13
FOXA2Q9Y261 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.76□□□□□ -2.13
FOXA2Q9Y261 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.76□□□□□ -2.13
FOXA2Q9Y261 AL133215.3-201ENST00000609801 448 ntBASIC1.76□□□□□ -2.13
FOXA2Q9Y261 AC005562.2-201ENST00000618264 111 ntBASIC1.76□□□□□ -2.13
FOXA2Q9Y261 MIR6873-201ENST00000622788 63 ntBASIC1.76□□□□□ -2.13
FOXA2Q9Y261 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
FOXA2Q9Y261 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.75□□□□□ -2.13
FOXA2Q9Y261 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
FOXA2Q9Y261 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.75□□□□□ -2.13
FOXA2Q9Y261 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
FOXA2Q9Y261 Y_RNA.3-201ENST00000362331 103 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 Y_RNA.100-201ENST00000363141 102 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 RNU4-12P-201ENST00000365233 139 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 RNU6-877P-201ENST00000383868 107 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 MIR221-201ENST00000385135 110 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 SNORA12.2-201ENST00000391040 156 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 AL033519.2-201ENST00000403958 392 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 RNA5SP489-201ENST00000410986 109 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.75□□□□□ -2.13
FOXA2Q9Y261 MTCO1P21-201ENST00000416634 589 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.75□□□□□ -2.13
FOXA2Q9Y261 WARS2P1-201ENST00000429678 537 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 PCMTD1P1-201ENST00000455560 355 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.75□□□□□ -2.13
FOXA2Q9Y261 RNVU1-2-201ENST00000516326 135 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 RNU2-44P-201ENST00000516795 194 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 AC026470.2-201ENST00000561492 181 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 RMST_6.1-201ENST00000611980 203 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 AC137590.2-201ENST00000619709 240 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 AC024614.3-201ENST00000637860 256 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 CENPCP1-201ENST00000533085 2578 ntBASIC1.75□□□□□ -2.13
FOXA2Q9Y261 RNU6-562P-201ENST00000362731 107 ntBASIC1.74□□□□□ -2.13
FOXA2Q9Y261 RNU6-784P-201ENST00000384330 106 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms