Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.27□□□□□ -2.05
VPS28Q9UK41 snoU13.6-201ENST00000458785 104 ntBASIC2.27□□□□□ -2.05
VPS28Q9UK41 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.27□□□□□ -2.05
VPS28Q9UK41 AC092989.1-201ENST00000481235 277 ntBASIC2.27□□□□□ -2.05
VPS28Q9UK41 RPS29P25-201ENST00000481709 171 ntBASIC2.27□□□□□ -2.05
VPS28Q9UK41 RNU6-1314P-201ENST00000517139 104 ntBASIC2.27□□□□□ -2.05
VPS28Q9UK41 MIR3945-201ENST00000581853 98 ntBASIC2.27□□□□□ -2.05
VPS28Q9UK41 AC100810.6-201ENST00000638068 285 ntBASIC2.27□□□□□ -2.05
VPS28Q9UK41 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.27□□□□□ -2.05
VPS28Q9UK41 AC009487.4-201ENST00000624969 3585 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 RNU6-1164P-201ENST00000364428 107 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 RNU6-784P-201ENST00000384330 106 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 RNU6-160P-201ENST00000384591 107 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
VPS28Q9UK41 RNU6-1093P-201ENST00000391194 107 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 RNU6-192P-201ENST00000391253 100 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 MIR1283-2-201ENST00000408621 87 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 RNA5SP494-201ENST00000410653 129 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 RNU2-41P-201ENST00000410991 178 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 FCF1P9-201ENST00000412546 282 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 BX510359.4-201ENST00000423750 193 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 PCMTD1P1-201ENST00000455560 355 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.26□□□□□ -2.05
VPS28Q9UK41 AC011352.1-201ENST00000512300 793 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.26□□□□□ -2.05
VPS28Q9UK41 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.26□□□□□ -2.05
VPS28Q9UK41 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.26□□□□□ -2.05
VPS28Q9UK41 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2.26□□□□□ -2.05
VPS28Q9UK41 AC090517.1-201ENST00000569307 266 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.26□□□□□ -2.05
VPS28Q9UK41 MIR4287-201ENST00000579398 78 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 MIR3672-201ENST00000584290 82 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 MIR4298-201ENST00000584380 73 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 AC023043.2-201ENST00000589678 1026 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 AC025754.2-201ENST00000606491 432 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 MIR3976-201ENST00000606807 139 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 AL160394.1-201ENST00000624765 724 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 AC027514.1-201ENST00000588561 1603 ntBASIC2.26□□□□□ -2.05
VPS28Q9UK41 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
VPS28Q9UK41 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.26□□□□□ -2.05
VPS28Q9UK41 RNU1-58P-201ENST00000362413 163 ntBASIC2.25□□□□□ -2.05
VPS28Q9UK41 RNU5B-2P-201ENST00000363036 113 ntBASIC2.25□□□□□ -2.05
VPS28Q9UK41 Y_RNA.212-201ENST00000364177 102 ntBASIC2.25□□□□□ -2.05
VPS28Q9UK41 RNA5SP37-201ENST00000365420 130 ntBASIC2.25□□□□□ -2.05
VPS28Q9UK41 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.25□□□□□ -2.05
VPS28Q9UK41 AL512604.1-201ENST00000404812 257 ntBASIC2.25□□□□□ -2.05
VPS28Q9UK41 SNORA11.4-201ENST00000408823 129 ntBASIC2.25□□□□□ -2.05
VPS28Q9UK41 EIF1P1-201ENST00000421436 341 ntBASIC2.25□□□□□ -2.05
VPS28Q9UK41 AL590632.1-201ENST00000424289 371 ntBASIC2.25□□□□□ -2.05
VPS28Q9UK41 MTND2P29-201ENST00000438595 412 ntBASIC2.25□□□□□ -2.05
VPS28Q9UK41 DAP3P1-201ENST00000441522 278 ntBASIC2.25□□□□□ -2.05
VPS28Q9UK41 AC096638.1-201ENST00000444678 216 ntBASIC2.25□□□□□ -2.05
VPS28Q9UK41 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.25□□□□□ -2.05
VPS28Q9UK41 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.25□□□□□ -2.05
VPS28Q9UK41 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.25□□□□□ -2.05
VPS28Q9UK41 RNU5F-4P-201ENST00000516581 114 ntBASIC2.25□□□□□ -2.05
VPS28Q9UK41 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.25□□□□□ -2.05
VPS28Q9UK41 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.25□□□□□ -2.05
VPS28Q9UK41 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.25□□□□□ -2.05
VPS28Q9UK41 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.25□□□□□ -2.05
VPS28Q9UK41 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.25□□□□□ -2.05
VPS28Q9UK41 AC009831.4-201ENST00000620744 325 ntBASIC2.25□□□□□ -2.05
VPS28Q9UK41 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.25□□□□□ -2.05
VPS28Q9UK41 AC098679.4-201ENST00000624241 654 ntBASIC2.25□□□□□ -2.05
VPS28Q9UK41 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.25□□□□□ -2.05
VPS28Q9UK41 ZNF702P-202ENST00000434269 1966 ntBASIC2.25□□□□□ -2.05
VPS28Q9UK41 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.25□□□□□ -2.05
VPS28Q9UK41 AC233981.2-201ENST00000611524 1614 ntBASIC2.24□□□□□ -2.05
VPS28Q9UK41 Y_RNA.151-201ENST00000363566 112 ntBASIC2.24□□□□□ -2.05
VPS28Q9UK41 Y_RNA.332-201ENST00000365271 113 ntBASIC2.24□□□□□ -2.05
VPS28Q9UK41 RPS26P42-201ENST00000413485 326 ntBASIC2.24□□□□□ -2.05
VPS28Q9UK41 AC096920.1-201ENST00000423991 241 ntBASIC2.24□□□□□ -2.05
VPS28Q9UK41 AL353572.1-201ENST00000442490 417 ntBASIC2.24□□□□□ -2.05
VPS28Q9UK41 MTND1P11-201ENST00000456661 876 ntBASIC2.24□□□□□ -2.05
VPS28Q9UK41 AC130509.1-201ENST00000464158 433 ntBASIC2.24□□□□□ -2.05
VPS28Q9UK41 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS28Q9UK41 RNA5SP200-201ENST00000516360 103 ntBASIC2.24□□□□□ -2.05
VPS28Q9UK41 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS28Q9UK41 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC2.24□□□□□ -2.05
VPS28Q9UK41 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS28Q9UK41 AL022345.1-201ENST00000607292 135 ntBASIC2.24□□□□□ -2.05
VPS28Q9UK41 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.24□□□□□ -2.05
VPS28Q9UK41 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.24□□□□□ -2.05
VPS28Q9UK41 SDR42E1P4-201ENST00000620894 481 ntBASIC2.24□□□□□ -2.05
VPS28Q9UK41 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
VPS28Q9UK41 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
VPS28Q9UK41 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.23□□□□□ -2.05
VPS28Q9UK41 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
VPS28Q9UK41 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 RNU6-438P-201ENST00000365561 103 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 SNORD116-11-201ENST00000383882 92 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 RNU6-1013P-201ENST00000384180 107 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 RNU11-3P-201ENST00000391111 133 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 HMGN2P3-201ENST00000433603 273 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 HMGN2P5-201ENST00000436882 273 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 AL513124.1-201ENST00000450410 614 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 RNU7-14P-201ENST00000459331 62 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 AC079804.2-201ENST00000490376 200 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 RPS29P21-201ENST00000496272 170 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 ATP5EP1-201ENST00000510257 156 ntBASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms