Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 EPS15P1-201ENST00000448836 336 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC0.99□□□□□ -2.25
USP42Q9H9J4 MTND2P39-201ENST00000457230 764 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 RAP1BP2-201ENST00000478270 544 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.99□□□□□ -2.25
USP42Q9H9J4 AC022447.4-201ENST00000504053 364 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 AC104806.1-201ENST00000508720 308 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 AC079140.3-201ENST00000511111 550 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC0.99□□□□□ -2.25
USP42Q9H9J4 RNA5SP481-201ENST00000516814 122 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 RNU6-685P-201ENST00000517088 95 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 AC022616.3-201ENST00000523940 148 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC0.99□□□□□ -2.25
USP42Q9H9J4 AC008751.2-201ENST00000597885 980 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 MIR3976-201ENST00000606807 139 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 AL451064.1-201ENST00000607718 471 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 AC027807.2-201ENST00000616099 408 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 AC008133.2-201ENST00000624540 351 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.99□□□□□ -2.25
USP42Q9H9J4 MIR340-201ENST00000362125 95 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 RNU6-500P-201ENST00000362349 107 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 RNU6-1285P-201ENST00000363480 105 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 RNU6-142P-201ENST00000384019 107 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 RN7SKP61-201ENST00000410642 295 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 AC098592.1-201ENST00000419352 333 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 ELOCP4-201ENST00000420090 333 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
USP42Q9H9J4 SNX2P2-201ENST00000424553 323 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 MTATP6P16-201ENST00000434543 526 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC0.98□□□□□ -2.25
USP42Q9H9J4 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC0.98□□□□□ -2.25
USP42Q9H9J4 RNU7-14P-201ENST00000459331 62 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC0.98□□□□□ -2.25
USP42Q9H9J4 RNU6-377P-201ENST00000515965 102 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 RNU5F-4P-201ENST00000516581 114 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 MRPS36P3-201ENST00000519284 130 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.98□□□□□ -2.25
USP42Q9H9J4 PCMTD1P2-201ENST00000565017 355 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 AL512605.2-201ENST00000592972 256 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 AC009878.1-201ENST00000621819 340 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 AC009033.1-201ENST00000624279 431 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 AC019226.2-201ENST00000625973 424 ntBASIC0.98□□□□□ -2.25
USP42Q9H9J4 Y_RNA.30-201ENST00000362572 97 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 RNU1-96P-201ENST00000364163 162 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 SNORA32.2-201ENST00000384049 122 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 MIR508-201ENST00000384857 115 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 RNU6-607P-201ENST00000411283 108 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC0.97□□□□□ -2.25
USP42Q9H9J4 EIF1P1-201ENST00000421436 341 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 MTND4P20-201ENST00000424125 869 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 AC099677.2-201ENST00000436385 175 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.97□□□□□ -2.25
USP42Q9H9J4 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.97□□□□□ -2.25
USP42Q9H9J4 RPL31P3-201ENST00000458430 332 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 RPS26P45-201ENST00000471748 340 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.97□□□□□ -2.25
USP42Q9H9J4 AC103851.1-201ENST00000506833 274 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 RNU6-311P-201ENST00000516224 102 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 SCARNA24.1-201ENST00000516465 137 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 SNORD60.2-201ENST00000516883 86 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC0.97□□□□□ -2.25
USP42Q9H9J4 RAB11AP2-201ENST00000545905 639 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 ZNF321P-202ENST00000550843 495 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 AC021231.3-201ENST00000558497 370 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.97□□□□□ -2.25
USP42Q9H9J4 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC0.97□□□□□ -2.25
USP42Q9H9J4 MIR3136-201ENST00000583498 78 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 AP003465.2-201ENST00000602571 373 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 AL590095.2-201ENST00000604136 117 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 AC091304.9-201ENST00000612091 226 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.97□□□□□ -2.25
USP42Q9H9J4 U4.7-201ENST00000638126 106 ntBASIC0.97□□□□□ -2.25
USP42Q9H9J4 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC0.97□□□□□ -2.25
USP42Q9H9J4 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
USP42Q9H9J4 Y_RNA.295-201ENST00000364918 102 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 RNU6-25P-201ENST00000383873 107 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 RNU6-48P-201ENST00000384161 107 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 RNU6-16P-201ENST00000384385 107 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 RNU6-15P-201ENST00000384534 107 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 RNU6-29P-201ENST00000384637 107 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 Y_RNA.576-201ENST00000384781 102 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 SNORA12.2-201ENST00000391040 156 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.96□□□□□ -2.26
USP42Q9H9J4 AL356583.2-201ENST00000426536 280 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 AC245047.4-201ENST00000433189 144 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 AC244670.1-201ENST00000436879 112 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 AC243964.1-201ENST00000441814 261 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC0.96□□□□□ -2.26
USP42Q9H9J4 RN7SKP88-201ENST00000516847 250 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC0.96□□□□□ -2.26
USP42Q9H9J4 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC0.96□□□□□ -2.26
USP42Q9H9J4 MIR1273G-201ENST00000577677 100 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 AC107304.1-201ENST00000604229 296 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 AL359999.1-201ENST00000604513 294 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 AL365434.2-201ENST00000607979 234 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 TUSC7.1-201ENST00000610969 165 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 7SK.8-201ENST00000612110 250 ntBASIC0.96□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms