Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC005520.5-201ENST00000613926 164 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 AC093913.1-201ENST00000614178 329 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 AC022306.2-201ENST00000617563 647 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.93□□□□□ -2.1
LIME1Q9H400 AC009541.1-201ENST00000438279 2662 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.92□□□□□ -2.1
LIME1Q9H400 AC131280.1-202ENST00000624067 4211 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.92□□□□□ -2.1
LIME1Q9H400 Y_RNA.151-201ENST00000363566 112 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 Y_RNA.160-201ENST00000363677 92 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 RNU6-944P-201ENST00000364023 107 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 SNORD32B-201ENST00000364460 84 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 RNU1-148P-201ENST00000384472 162 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 Y_RNA.595-201ENST00000410403 105 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 RNU2-48P-201ENST00000410694 191 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 MTND1P23-201ENST00000416931 372 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1.92□□□□□ -2.1
LIME1Q9H400 CYCSP49-201ENST00000420810 319 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 Z82209.1-201ENST00000422141 2135 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.92□□□□□ -2.1
LIME1Q9H400 MTND5P5-201ENST00000503764 376 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 AC116353.2-201ENST00000505332 712 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.92□□□□□ -2.1
LIME1Q9H400 RNU6-295P-201ENST00000516901 104 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 HSPE1P18-201ENST00000517602 280 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.92□□□□□ -2.1
LIME1Q9H400 AC118273.2-201ENST00000532092 465 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
LIME1Q9H400 MIR4446-201ENST00000578505 67 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 MIR4801-201ENST00000582704 82 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 MIR5007-201ENST00000583098 95 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.92□□□□□ -2.1
LIME1Q9H400 AL355297.2-201ENST00000604792 129 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 RBM11P1-201ENST00000604951 799 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 AL670379.2-201ENST00000604983 252 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 MIR7111-201ENST00000619751 72 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.92□□□□□ -2.1
LIME1Q9H400 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC1.92□□□□□ -2.1
LIME1Q9H400 AL133216.2-202ENST00000634512 349 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.92□□□□□ -2.1
LIME1Q9H400 AP006437.1-201ENST00000641440 3685 ntBASIC1.92□□□□□ -2.1
LIME1Q9H400 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.91□□□□□ -2.1
LIME1Q9H400 RNU6-845P-201ENST00000362578 103 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 RNU1-17P-201ENST00000363022 152 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 RNU5B-2P-201ENST00000363036 113 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 Y_RNA.339-201ENST00000365325 102 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 RNU6-1286P-201ENST00000383871 107 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 RNU6-767P-201ENST00000384132 107 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 RNU1-52P-201ENST00000384190 164 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 SNORA36A-201ENST00000384221 132 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 RNU6-933P-201ENST00000384424 107 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 MIR517A-201ENST00000385001 87 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
LIME1Q9H400 SNORA46.1-201ENST00000391069 153 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
LIME1Q9H400 MIR548K-201ENST00000408406 116 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 SNORA11.4-201ENST00000408823 129 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 HMGB3P2-201ENST00000411913 584 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 RPS26P42-201ENST00000413485 326 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 PDCL2P1-201ENST00000419302 352 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 WARS2P1-201ENST00000429678 537 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
LIME1Q9H400 AC079354.2-201ENST00000453523 154 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 RN7SKP210-201ENST00000459176 261 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 AC068781.1-201ENST00000488231 618 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.91□□□□□ -2.1
LIME1Q9H400 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.91□□□□□ -2.1
LIME1Q9H400 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.91□□□□□ -2.1
LIME1Q9H400 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.91□□□□□ -2.1
LIME1Q9H400 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.91□□□□□ -2.1
LIME1Q9H400 AP000942.3-201ENST00000603702 160 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
LIME1Q9H400 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 AC090517.3-201ENST00000625170 141 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 MIR219B-201ENST00000637023 88 ntBASIC1.91□□□□□ -2.1
LIME1Q9H400 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
LIME1Q9H400 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
LIME1Q9H400 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.1
LIME1Q9H400 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
LIME1Q9H400 CBX3P1-201ENST00000325243 554 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 SNORD50.1-201ENST00000362987 71 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 SNORA38-201ENST00000363946 132 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 RNU6-596P-201ENST00000365395 98 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 SNORA25B-201ENST00000365507 128 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
LIME1Q9H400 Y_RNA.504-201ENST00000384481 104 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 U8.13-201ENST00000390842 128 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 RNU6-876P-201ENST00000391295 104 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.9□□□□□ -2.11
LIME1Q9H400 AC138393.2-201ENST00000414742 246 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 CBX3P6-201ENST00000430257 527 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.9□□□□□ -2.11
LIME1Q9H400 GPM6BP3-201ENST00000442797 145 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
LIME1Q9H400 PCMTD1P1-201ENST00000455560 355 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 SNRPGP7-201ENST00000469016 106 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 AC104564.1-201ENST00000493028 407 ntBASIC1.9□□□□□ -2.11
LIME1Q9H400 AC145146.1-201ENST00000496370 254 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms