Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 RNU6-227P-201ENST00000362865 103 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 SNORA67.1-201ENST00000364749 141 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 MIR561-201ENST00000385216 97 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 MIR524-201ENST00000385242 87 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 RNU6-325P-201ENST00000411132 105 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 AL030996.1-201ENST00000411430 235 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 MTND1P23-201ENST00000416931 372 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 MTCO3P18-201ENST00000440206 761 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 AC092473.1-201ENST00000441098 221 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 RBMX2P4-201ENST00000441256 376 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 AL353572.1-201ENST00000442490 417 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 AL031659.1-201ENST00000447075 539 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 AC016632.1-201ENST00000503994 196 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 RNU4-49P-201ENST00000516080 140 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 CBX3P7-201ENST00000532876 502 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 MIR4446-201ENST00000578505 67 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 MIR5089-201ENST00000580047 84 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 MIR4303-201ENST00000581299 66 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 MIR4658-201ENST00000584344 65 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 AC019193.3-201ENST00000609144 554 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 MIR8081-201ENST00000611533 95 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 FAM157A-202ENST00000615155 405 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 HMGB1P24-202ENST00000615653 685 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 AC009248.2-201ENST00000619826 254 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 MIR203B-201ENST00000636080 86 ntBASIC2.36□□□□□ -2.03
ZNF541Q9H0D2 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 CBX3P1-201ENST00000325243 554 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 Y_RNA.160-201ENST00000363677 92 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 RNU6-1283P-201ENST00000365314 105 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 RNU6-831P-201ENST00000384548 107 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 RNU6-1072P-201ENST00000384703 107 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 RNU6-443P-201ENST00000384780 107 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 RPL30P16-201ENST00000419341 429 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 AC078809.1-201ENST00000427601 140 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 SNAP23P1-201ENST00000433229 246 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 AL645568.3-201ENST00000433683 316 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 IFNA20P-201ENST00000436840 528 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 AL163540.1-201ENST00000485382 386 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 RNU5F-2P-201ENST00000516066 82 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 SNORA25.15-201ENST00000516487 89 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 AC107953.1-201ENST00000522216 297 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 AC087241.2-201ENST00000535801 324 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 AC005668.1-201ENST00000571142 476 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 MIR5002-201ENST00000584713 97 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 AC018889.1-201ENST00000605372 397 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 AL136221.1-201ENST00000621449 509 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 AC084768.2-201ENST00000622736 221 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 SNORD98-201ENST00000636377 67 ntBASIC2.35□□□□□ -2.03
ZNF541Q9H0D2 Z82209.1-201ENST00000422141 2135 ntBASIC2.34□□□□□ -2.03
ZNF541Q9H0D2 Y_RNA.151-201ENST00000363566 112 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 SNORD116-11-201ENST00000383882 92 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 SNORA51.11-201ENST00000384442 131 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 MIR29B2-201ENST00000385055 81 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 AL356776.1-201ENST00000406574 447 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 HMGB3P2-201ENST00000411913 584 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 AL139396.1-201ENST00000421137 167 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 AIMP1P2-201ENST00000425294 312 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 snoU13.14-201ENST00000459372 104 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 AC130509.1-201ENST00000464158 433 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 AC022447.4-201ENST00000504053 364 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 AC008526.1-201ENST00000509149 338 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 SCOCP1-201ENST00000554676 349 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 MIR3942-201ENST00000585264 109 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 AC060780.3-201ENST00000589464 80 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 AL713866.2-201ENST00000603579 219 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 AL138726.1-201ENST00000614873 333 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 AC009233.1-201ENST00000616477 371 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 AL159153.1-201ENST00000619688 317 ntBASIC2.34□□□□□ -2.04
ZNF541Q9H0D2 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 Y_RNA.123-201ENST00000363338 102 ntBASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 Y_RNA.212-201ENST00000364177 102 ntBASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 RNU6-1148P-201ENST00000410992 104 ntBASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 AP000275.1-201ENST00000411943 390 ntBASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 AL590632.1-201ENST00000424289 371 ntBASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 AC009238.1-201ENST00000442165 424 ntBASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 AC009237.6-201ENST00000446969 424 ntBASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms