Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL591034.2-201ENST00000402839 359 ntBASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 RNA5SP201-201ENST00000410316 124 ntBASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 EIF4EP2-201ENST00000422816 654 ntBASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 AC098614.3-201ENST00000438957 440 ntBASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 MTND5P5-201ENST00000503764 376 ntBASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 RPL39P5-202ENST00000512505 151 ntBASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 HSPE1P18-201ENST00000517602 280 ntBASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 IGLV3-17-201ENST00000519099 244 ntBASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 AC015712.3-201ENST00000559380 164 ntBASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 AC025754.2-201ENST00000606491 432 ntBASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 SNORD14A-201ENST00000606526 91 ntBASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 AC009541.1-201ENST00000438279 2662 ntBASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 RNU4-15P-201ENST00000362613 141 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 Y_RNA.151-201ENST00000363566 112 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 RNU6-1286P-201ENST00000383871 107 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 SNORA67.3-201ENST00000384366 140 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 MIR524-201ENST00000385242 87 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 RPS26P42-201ENST00000413485 326 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 AC074085.1-201ENST00000413598 418 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 AL590135.1-201ENST00000422215 156 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 AC019205.3-201ENST00000424573 156 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 AC016700.2-201ENST00000446011 156 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 PPP1R2P5-201ENST00000457256 603 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 AC015911.1-201ENST00000495111 156 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 HMGN1P12-201ENST00000499125 195 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 AC107222.1-201ENST00000510899 637 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 AC091874.1-201ENST00000511402 339 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 RNU7-30P-201ENST00000516835 62 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 AC007375.1-201ENST00000554513 578 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 CYP4A27P-201ENST00000567218 190 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 AC009127.3-201ENST00000570531 403 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 MIR3923-201ENST00000579521 83 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 AL355297.2-201ENST00000604792 129 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 AL670379.2-201ENST00000604983 252 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 AC019193.3-201ENST00000609144 554 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 uc_338.5-201ENST00000611839 155 ntBASIC2.14□□□□□ -2.07
CCDC3Q9BQI4 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 MIRLET7G-201ENST00000362280 84 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 RNU5B-2P-201ENST00000363036 113 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 SNORA3A-201ENST00000364113 130 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 RNU6-1274P-201ENST00000384557 107 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 MIR517A-201ENST00000385001 87 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 RN7SKP158-201ENST00000410453 326 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 PDCL2P1-201ENST00000419302 352 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 MTND3P9-201ENST00000429526 346 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 AL353572.1-201ENST00000442490 417 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 GPM6BP3-201ENST00000442797 145 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 AL139109.1-201ENST00000455491 297 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 SNORD5.1-201ENST00000458800 75 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 AC121758.2-201ENST00000553271 193 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 POLR3GP2-201ENST00000588366 668 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 AL078605.1-201ENST00000603529 500 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 RPL17P51-201ENST00000605218 238 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 AL355073.2-201ENST00000612106 557 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 AL133216.2-202ENST00000634512 349 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 MIR219B-201ENST00000637023 88 ntBASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
CCDC3Q9BQI4 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 SNORD32B-201ENST00000364460 84 ntBASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 U3.13-201ENST00000364804 214 ntBASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 Y_RNA.504-201ENST00000384481 104 ntBASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 RNU6-174P-201ENST00000410406 106 ntBASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 HMGB3P2-201ENST00000411913 584 ntBASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 AC012306.1-201ENST00000423267 114 ntBASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 HMGB1P18-201ENST00000438801 619 ntBASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 CKS1BP2-201ENST00000497342 240 ntBASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 AC116337.1-201ENST00000509680 687 ntBASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 ACA59.1-201ENST00000515966 143 ntBASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 Y_RNA.682-201ENST00000516457 100 ntBASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 MIR4790-201ENST00000577799 79 ntBASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 MIR5696-201ENST00000578474 85 ntBASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 UBE2V2P2-201ENST00000587677 504 ntBASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 Z98751.3-201ENST00000604447 521 ntBASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 AC137590.2-201ENST00000619709 240 ntBASIC2.12□□□□□ -2.07
CCDC3Q9BQI4 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms