Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC019176.1-201ENST00000518519 225 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 CYCSP27-201ENST00000527643 293 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC1.48□□□□□ -2.17
CDX2Q99626 AC025449.1-201ENST00000603896 529 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 ELOCP5-201ENST00000604924 333 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 MIR98-201ENST00000606724 119 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 AL133173.2-201ENST00000614270 90 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 AL359314.1-201ENST00000616913 261 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 AL132822.1-201ENST00000617063 513 ntBASIC1.48□□□□□ -2.17
CDX2Q99626 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.48□□□□□ -2.17
CDX2Q99626 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
CDX2Q99626 RNU6-1210P-201ENST00000363775 107 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 SNORD48-201ENST00000364953 64 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 RNU6-234P-201ENST00000365229 104 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 MIR518A2-201ENST00000384966 87 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 MIR222-201ENST00000384992 110 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 RNU6-550P-201ENST00000391057 101 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 MIR1283-2-201ENST00000408621 87 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 RNU2-9P-201ENST00000410194 145 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 OR9R1P-201ENST00000412200 877 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 OR6C66P-201ENST00000414917 930 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.47□□□□□ -2.17
CDX2Q99626 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.47□□□□□ -2.17
CDX2Q99626 AL596276.1-201ENST00000434465 418 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.47□□□□□ -2.17
CDX2Q99626 SNRPGP13-201ENST00000442212 177 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.47□□□□□ -2.17
CDX2Q99626 AC132479.1-201ENST00000449160 144 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 HMGN2P18-201ENST00000450680 270 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 RPS3AP17-201ENST00000472594 777 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.47□□□□□ -2.17
CDX2Q99626 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC1.47□□□□□ -2.17
CDX2Q99626 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.47□□□□□ -2.17
CDX2Q99626 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC1.47□□□□□ -2.17
CDX2Q99626 Y_RNA.681-201ENST00000516445 113 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 RNU6-314P-201ENST00000516574 104 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 RNU6-410P-201ENST00000517006 107 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 RNU6-586P-201ENST00000517265 104 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.47□□□□□ -2.17
CDX2Q99626 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.47□□□□□ -2.17
CDX2Q99626 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC1.47□□□□□ -2.17
CDX2Q99626 AC024614.2-201ENST00000577584 372 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 MIR4775-201ENST00000581168 75 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 Z84480.1-201ENST00000605131 311 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
CDX2Q99626 AL773524.1-201ENST00000614065 229 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 AC124864.2-201ENST00000624736 186 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 Z69720.2-201ENST00000624755 279 ntBASIC1.47□□□□□ -2.17
CDX2Q99626 Y_RNA.38-201ENST00000362617 102 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 U8.1-201ENST00000362843 134 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 RNU6-655P-201ENST00000362858 107 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 Y_RNA.248-201ENST00000364501 109 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 RNU6-483P-201ENST00000384088 108 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 MIR454-201ENST00000390180 115 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 MTCO3P40-201ENST00000392516 676 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 RAP1BP3-201ENST00000407180 549 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 AL158823.1-201ENST00000418441 478 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 PGBD4P6-201ENST00000421501 610 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC1.46□□□□□ -2.18
CDX2Q99626 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.46□□□□□ -2.18
CDX2Q99626 HSPE1P21-201ENST00000438283 308 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 RBMX2P4-201ENST00000441256 376 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.46□□□□□ -2.18
CDX2Q99626 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.46□□□□□ -2.18
CDX2Q99626 AL353752.1-201ENST00000454946 260 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 SNRPFP3-201ENST00000457792 225 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 HMGB1P35-201ENST00000503360 598 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 AC019235.1-201ENST00000503847 207 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
CDX2Q99626 AC009646.1-201ENST00000510455 318 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 AC134698.4-201ENST00000523451 826 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.46□□□□□ -2.18
CDX2Q99626 HSBP1P1-201ENST00000555205 166 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.46□□□□□ -2.18
CDX2Q99626 MIR3682-201ENST00000581338 84 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 AC008752.3-201ENST00000588113 712 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.46□□□□□ -2.18
CDX2Q99626 AP003465.2-201ENST00000602571 373 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 AC092794.1-201ENST00000612734 582 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 AC007014.2-201ENST00000615581 479 ntBASIC1.46□□□□□ -2.18
CDX2Q99626 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.45□□□□□ -2.18
CDX2Q99626 RNU6-944P-201ENST00000364023 107 ntBASIC1.45□□□□□ -2.18
CDX2Q99626 RNY1P12-201ENST00000364251 105 ntBASIC1.45□□□□□ -2.18
CDX2Q99626 RNU4-42P-201ENST00000364738 142 ntBASIC1.45□□□□□ -2.18
CDX2Q99626 U3.13-201ENST00000364804 214 ntBASIC1.45□□□□□ -2.18
CDX2Q99626 RNU6-1158P-201ENST00000391167 107 ntBASIC1.45□□□□□ -2.18
CDX2Q99626 RNU4-55P-201ENST00000410731 137 ntBASIC1.45□□□□□ -2.18
CDX2Q99626 FCF1P9-201ENST00000412546 282 ntBASIC1.45□□□□□ -2.18
CDX2Q99626 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
CDX2Q99626 AC138623.1-201ENST00000418060 216 ntBASIC1.45□□□□□ -2.18
CDX2Q99626 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.45□□□□□ -2.18
CDX2Q99626 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
CDX2Q99626 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.45□□□□□ -2.18
CDX2Q99626 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC1.45□□□□□ -2.18
CDX2Q99626 GPR143P-201ENST00000434155 205 ntBASIC1.45□□□□□ -2.18
CDX2Q99626 UBE2V1P8-201ENST00000437166 265 ntBASIC1.45□□□□□ -2.18
CDX2Q99626 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC1.45□□□□□ -2.18
CDX2Q99626 AC079781.2-201ENST00000446424 169 ntBASIC1.45□□□□□ -2.18
CDX2Q99626 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms