Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 Y_RNA.419-201ENST00000384041 102 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 RNU4-52P-201ENST00000384209 138 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 RNU6-622P-201ENST00000384272 103 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 RNU6-843P-201ENST00000384454 104 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 RNU6-748P-201ENST00000384648 107 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.23□□□□□ -2.05
USP28Q96RU2 AL133396.1-201ENST00000432048 687 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 RPS15AP10-201ENST00000432472 382 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 PCMTD1P1-201ENST00000455560 355 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 Y_RNA.635-201ENST00000459041 101 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 RPL30P12-201ENST00000474666 353 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.23□□□□□ -2.05
USP28Q96RU2 RNU6-1016P-201ENST00000516689 94 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 RNU7-193P-201ENST00000516723 65 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 RNU6-612P-201ENST00000516909 102 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.23□□□□□ -2.05
USP28Q96RU2 CYCSP26-201ENST00000534107 320 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.23□□□□□ -2.05
USP28Q96RU2 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.23□□□□□ -2.05
USP28Q96RU2 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.23□□□□□ -2.05
USP28Q96RU2 AC018462.2-201ENST00000605375 395 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 AC019193.3-201ENST00000609144 554 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 SCARNA15.3-201ENST00000626315 122 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 SCARNA4.1-201ENST00000628597 123 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 KPNA2P1-201ENST00000458289 1591 ntBASIC2.23□□□□□ -2.05
USP28Q96RU2 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
USP28Q96RU2 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
USP28Q96RU2 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.22□□□□□ -2.05
USP28Q96RU2 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
USP28Q96RU2 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
USP28Q96RU2 RNU6-790P-201ENST00000384479 105 ntBASIC2.22□□□□□ -2.05
USP28Q96RU2 MIR544A-201ENST00000384855 91 ntBASIC2.22□□□□□ -2.05
USP28Q96RU2 U3.40-201ENST00000408706 208 ntBASIC2.22□□□□□ -2.05
USP28Q96RU2 Y_RNA.594-201ENST00000410373 140 ntBASIC2.22□□□□□ -2.05
USP28Q96RU2 RNU2-20P-201ENST00000410425 191 ntBASIC2.22□□□□□ -2.05
USP28Q96RU2 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.22□□□□□ -2.05
USP28Q96RU2 AL591043.1-201ENST00000432461 424 ntBASIC2.22□□□□□ -2.05
USP28Q96RU2 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.22□□□□□ -2.05
USP28Q96RU2 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
USP28Q96RU2 SNRPGP7-201ENST00000469016 106 ntBASIC2.22□□□□□ -2.05
USP28Q96RU2 FO393415.2-201ENST00000480085 343 ntBASIC2.22□□□□□ -2.05
USP28Q96RU2 RNU1-54P-201ENST00000517181 120 ntBASIC2.22□□□□□ -2.05
USP28Q96RU2 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.22□□□□□ -2.05
USP28Q96RU2 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.22□□□□□ -2.05
USP28Q96RU2 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.22□□□□□ -2.05
USP28Q96RU2 AC090897.2-201ENST00000581715 130 ntBASIC2.22□□□□□ -2.05
USP28Q96RU2 AC011494.1-201ENST00000596454 237 ntBASIC2.22□□□□□ -2.05
USP28Q96RU2 AP000654.2-201ENST00000605633 586 ntBASIC2.22□□□□□ -2.05
USP28Q96RU2 AC124303.1-201ENST00000605703 360 ntBASIC2.22□□□□□ -2.05
USP28Q96RU2 AC009229.3-201ENST00000608056 282 ntBASIC2.22□□□□□ -2.05
USP28Q96RU2 AC084781.2-201ENST00000615568 161 ntBASIC2.22□□□□□ -2.05
USP28Q96RU2 U4atac.1-201ENST00000618345 95 ntBASIC2.22□□□□□ -2.05
USP28Q96RU2 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.22□□□□□ -2.05
USP28Q96RU2 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.22□□□□□ -2.05
USP28Q96RU2 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.22□□□□□ -2.05
USP28Q96RU2 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.21□□□□□ -2.06
USP28Q96RU2 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
USP28Q96RU2 Y_RNA.40-201ENST00000362645 93 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 RNU6-1188P-201ENST00000363795 107 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 Y_RNA.387-201ENST00000383918 102 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 Y_RNA.482-201ENST00000384377 111 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 Y_RNA.535-201ENST00000384612 99 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 MIR521-1-201ENST00000384902 87 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 SUMO2P12-201ENST00000405924 140 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 NCOR1P3-201ENST00000420479 303 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.21□□□□□ -2.06
USP28Q96RU2 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.21□□□□□ -2.06
USP28Q96RU2 MTCO3P10-201ENST00000455912 772 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.21□□□□□ -2.06
USP28Q96RU2 SNORD5.1-201ENST00000458800 75 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 AC112771.1-201ENST00000463581 102 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 AC068781.1-201ENST00000488231 618 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.21□□□□□ -2.06
USP28Q96RU2 RNU6-120P-201ENST00000516077 103 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 RNA5SP384-201ENST00000516615 116 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 Y_RNA.718-201ENST00000517110 102 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.21□□□□□ -2.06
USP28Q96RU2 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.21□□□□□ -2.06
USP28Q96RU2 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.21□□□□□ -2.06
USP28Q96RU2 MIR4448-201ENST00000584360 86 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 BNIP3P16-201ENST00000589779 534 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.21□□□□□ -2.06
USP28Q96RU2 AP001836.1-201ENST00000604675 523 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 AL050343.2-201ENST00000607338 280 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC2.21□□□□□ -2.06
USP28Q96RU2 AL669831.3-213ENST00000636676 183 ntBASIC2.21□□□□□ -2.06
USP28Q96RU2 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
USP28Q96RU2 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.21□□□□□ -2.06
USP28Q96RU2 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
USP28Q96RU2 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
USP28Q96RU2 Y_RNA.48-201ENST00000362710 103 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 Y_RNA.259-201ENST00000364619 101 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 SNORD32A-201ENST00000364805 84 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 RNU6-331P-201ENST00000384724 107 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 RNU6-1050P-201ENST00000410388 107 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 Y_RNA.646-201ENST00000410980 101 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 AL135786.1-201ENST00000415892 214 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 AF228730.4-201ENST00000421457 183 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms