Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC-1.27□□□□□ -2.61
VPS13AQ96RL7 AC087481.2-201ENST00000565492 330 ntBASIC-1.27□□□□□ -2.61
VPS13AQ96RL7 AL392003.1-201ENST00000434394 243 ntBASIC-1.28□□□□□ -2.61
VPS13AQ96RL7 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC-1.28□□□□□ -2.61
VPS13AQ96RL7 RNF138P1-201ENST00000502765 546 ntBASIC-1.28□□□□□ -2.61
VPS13AQ96RL7 RNA5SP66-201ENST00000517178 101 ntBASIC-1.28□□□□□ -2.61
VPS13AQ96RL7 AL136317.1-201ENST00000612653 226 ntBASIC-1.28□□□□□ -2.61
VPS13AQ96RL7 AL445584.3-201ENST00000617173 78 ntBASIC-1.28□□□□□ -2.61
VPS13AQ96RL7 Y_RNA.49-201ENST00000362714 112 ntBASIC-1.28□□□□□ -2.61
VPS13AQ96RL7 MTCYBP32-201ENST00000427945 1084 ntBASIC-1.28□□□□□ -2.61
VPS13AQ96RL7 AC003071.1-201ENST00000451219 789 ntBASIC-1.28□□□□□ -2.61
VPS13AQ96RL7 SNORA70.12-201ENST00000516084 153 ntBASIC-1.28□□□□□ -2.61
VPS13AQ96RL7 AC106754.1-201ENST00000562632 1513 ntBASIC-1.28□□□□□ -2.61
VPS13AQ96RL7 AC002486.1-201ENST00000435098 391 ntBASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 OFD1P7Y-201ENST00000454643 1155 ntBASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 RNU6-1110P-201ENST00000516462 101 ntBASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 AP002360.4-201ENST00000606980 481 ntBASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 RNU6ATAC35P-201ENST00000609276 444 ntBASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 AC104985.3-201ENST00000623479 597 ntBASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 AL359385.1-201ENST00000456509 365 ntBASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 RNA5SP272-201ENST00000516095 111 ntBASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 AC095057.3-201ENST00000567102 1157 ntBASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 MIR3612-201ENST00000579753 87 ntBASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 AP003072.4-201ENST00000624580 310 ntBASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 AC126365.2-201ENST00000580630 379 ntBASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 AP005212.4-201ENST00000614206 710 ntBASIC-1.29□□□□□ -2.62
VPS13AQ96RL7 AC099677.2-201ENST00000436385 175 ntBASIC-1.3□□□□□ -2.62
VPS13AQ96RL7 AC026616.1-201ENST00000523157 525 ntBASIC-1.3□□□□□ -2.62
VPS13AQ96RL7 AC012213.3-201ENST00000577199 777 ntBASIC-1.3□□□□□ -2.62
VPS13AQ96RL7 SNORA25.18-201ENST00000607153 114 ntBASIC-1.3□□□□□ -2.62
VPS13AQ96RL7 AC004775.1-201ENST00000607389 753 ntBASIC-1.3□□□□□ -2.62
VPS13AQ96RL7 AC131159.1-201ENST00000621854 213 ntBASIC-1.3□□□□□ -2.62
VPS13AQ96RL7 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.3□□□□□ -2.62
VPS13AQ96RL7 SNORA24.1-201ENST00000384401 135 ntBASIC-1.3□□□□□ -2.62
VPS13AQ96RL7 AL663109.1-201ENST00000411498 844 ntBASIC-1.3□□□□□ -2.62
VPS13AQ96RL7 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC-1.3□□□□□ -2.62
VPS13AQ96RL7 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC-1.3□□□□□ -2.62
VPS13AQ96RL7 RNU7-129P-201ENST00000516128 62 ntBASIC-1.3□□□□□ -2.62
VPS13AQ96RL7 AL355810.1-201ENST00000614629 552 ntBASIC-1.3□□□□□ -2.62
VPS13AQ96RL7 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC-1.3□□□□□ -2.62
VPS13AQ96RL7 AC123900.1-201ENST00000420390 96 ntBASIC-1.31□□□□□ -2.62
VPS13AQ96RL7 MTND2P5-201ENST00000432656 1006 ntBASIC-1.31□□□□□ -2.62
VPS13AQ96RL7 RPL36AP48-201ENST00000485521 314 ntBASIC-1.31□□□□□ -2.62
VPS13AQ96RL7 AC074133.1-201ENST00000515696 183 ntBASIC-1.31□□□□□ -2.62
VPS13AQ96RL7 RNA5SP504-201ENST00000410676 117 ntBASIC-1.31□□□□□ -2.62
VPS13AQ96RL7 AC069257.2-201ENST00000441819 155 ntBASIC-1.31□□□□□ -2.62
VPS13AQ96RL7 RPS20P24-201ENST00000457473 361 ntBASIC-1.31□□□□□ -2.62
VPS13AQ96RL7 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC-1.31□□□□□ -2.62
VPS13AQ96RL7 RNU6-650P-201ENST00000365658 111 ntBASIC-1.31□□□□□ -2.62
VPS13AQ96RL7 MIR873-201ENST00000401120 77 ntBASIC-1.31□□□□□ -2.62
VPS13AQ96RL7 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC-1.31□□□□□ -2.62
VPS13AQ96RL7 AL163051.2-201ENST00000618976 735 ntBASIC-1.31□□□□□ -2.62
VPS13AQ96RL7 GTF2IP20-201ENST00000431663 360 ntBASIC-1.32□□□□□ -2.62
VPS13AQ96RL7 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC-1.32□□□□□ -2.62
VPS13AQ96RL7 AP002371.1-201ENST00000463604 433 ntBASIC-1.32□□□□□ -2.62
VPS13AQ96RL7 AP005229.2-201ENST00000609980 697 ntBASIC-1.32□□□□□ -2.62
VPS13AQ96RL7 MTND4P9-201ENST00000507819 1346 ntBASIC-1.32□□□□□ -2.62
VPS13AQ96RL7 AL158050.1-201ENST00000416077 457 ntBASIC-1.32□□□□□ -2.62
VPS13AQ96RL7 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC-1.32□□□□□ -2.62
VPS13AQ96RL7 RNU6-118P-201ENST00000516552 102 ntBASIC-1.32□□□□□ -2.62
VPS13AQ96RL7 AC098483.2-201ENST00000603158 454 ntBASIC-1.32□□□□□ -2.62
VPS13AQ96RL7 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 RNU6-312P-201ENST00000364629 107 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 Y_RNA.329-201ENST00000365209 107 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 MIR194-1-201ENST00000384892 85 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 MIR1250-201ENST00000408098 113 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 MTCYBP29-201ENST00000436327 1006 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 AC007327.1-201ENST00000447461 264 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 ADAM3B-201ENST00000569937 840 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 AC079791.1-201ENST00000605356 973 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 RNU6-47P-201ENST00000383866 107 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 RPS20P2-201ENST00000402520 389 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 AC011233.1-201ENST00000422812 283 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 AC010493.1-201ENST00000513479 292 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 AC021146.6-201ENST00000514659 117 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 RNU6-980P-201ENST00000516925 103 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 UBE2Q2P6-201ENST00000612666 153 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 AC112204.3-201ENST00000623822 332 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 AC068057.2-201ENST00000624047 895 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 AC098679.4-201ENST00000624241 654 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 Y_RNA.315-201ENST00000365117 102 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 RPL30P1-201ENST00000488676 339 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 RNA5SP169-201ENST00000517268 117 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 AC069294.1-201ENST00000608397 350 ntBASIC-1.33□□□□□ -2.62
VPS13AQ96RL7 Y_RNA.133-201ENST00000363428 110 ntBASIC-1.34□□□□□ -2.62
VPS13AQ96RL7 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-1.34□□□□□ -2.62
VPS13AQ96RL7 MTCO3P17-201ENST00000443775 513 ntBASIC-1.34□□□□□ -2.62
VPS13AQ96RL7 RNU6-581P-201ENST00000516214 105 ntBASIC-1.34□□□□□ -2.62
VPS13AQ96RL7 RNU5A-4P-201ENST00000516588 111 ntBASIC-1.34□□□□□ -2.62
VPS13AQ96RL7 MAL2-206ENST00000522187 547 ntTSL 4 BASIC-1.34□□□□□ -2.62
VPS13AQ96RL7 SNORD3E-202ENST00000627253 216 ntBASIC-1.34□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms