Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 RNU1-75P-201ENST00000347264 129 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 RNU6-153P-201ENST00000364422 104 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 Y_RNA.272-201ENST00000364696 102 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 RNU6-818P-201ENST00000364837 108 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 Y_RNA.308-201ENST00000365043 101 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 Y_RNA.500-201ENST00000384466 111 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 MIR186-201ENST00000384988 86 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 AL031121.1-201ENST00000406553 254 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 MTCO1P5-201ENST00000433573 344 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 AC107083.1-201ENST00000439643 279 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 SNORD2.1-201ENST00000458762 69 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 RPL23AP67-201ENST00000465341 474 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 RPL23AP45-201ENST00000476406 468 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 AP001025.1-201ENST00000486139 332 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 TRAPPC2P7-201ENST00000509650 231 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.29□□□□□ -1.88
CHFRQ96EP1 RNU6-612P-201ENST00000516909 102 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 Y_RNA.706-201ENST00000516933 99 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.29□□□□□ -1.88
CHFRQ96EP1 AC011602.1-201ENST00000546484 331 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC3.29□□□□□ -1.88
CHFRQ96EP1 AC090617.3-201ENST00000573670 475 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 SNORD113-5-201ENST00000607261 78 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.29□□□□□ -1.88
CHFRQ96EP1 uc_338.1-201ENST00000612113 180 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.29□□□□□ -1.88
CHFRQ96EP1 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 IGHVIII-44-202ENST00000636235 289 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
CHFRQ96EP1 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.29□□□□□ -1.88
CHFRQ96EP1 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CHFRQ96EP1 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
CHFRQ96EP1 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CHFRQ96EP1 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.29□□□□□ -1.88
CHFRQ96EP1 AC100821.1-201ENST00000523153 2479 ntBASIC3.29□□□□□ -1.88
CHFRQ96EP1 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CHFRQ96EP1 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
CHFRQ96EP1 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CHFRQ96EP1 UBE2WP1-201ENST00000362030 340 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 RNU6-222P-201ENST00000362438 107 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 Y_RNA.261-201ENST00000364631 102 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 RNA5SP205-201ENST00000364653 136 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 Y_RNA.343-201ENST00000365354 112 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 RNU6-926P-201ENST00000384075 107 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 RNU6-318P-201ENST00000384283 103 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 Y_RNA.569-201ENST00000384749 103 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.28□□□□□ -1.88
CHFRQ96EP1 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.28□□□□□ -1.88
CHFRQ96EP1 AL035461.1-201ENST00000421490 332 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 HMGB1P27-201ENST00000431429 603 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 Z82188.1-201ENST00000436709 154 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 TOMM22P6-201ENST00000465035 409 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 AC114982.1-201ENST00000469402 321 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 AC091959.1-201ENST00000495857 238 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 RNU7-175P-201ENST00000515915 61 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 RNA5SP471-201ENST00000516971 106 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 RNU6-1315P-201ENST00000517187 99 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 AC107934.2-201ENST00000518653 310 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 MIR1273C-201ENST00000578669 77 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 MIR4672-201ENST00000583126 81 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 AC093732.2-201ENST00000607950 274 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.28□□□□□ -1.88
CHFRQ96EP1 MTND1P7-201ENST00000632801 297 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 AL137790.1-201ENST00000634283 177 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CHFRQ96EP1 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.28□□□□□ -1.88
CHFRQ96EP1 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
CHFRQ96EP1 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CHFRQ96EP1 AL109809.4-201ENST00000603520 2185 ntBASIC3.28□□□□□ -1.88
CHFRQ96EP1 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CHFRQ96EP1 AL353746.1-201ENST00000566293 6881 ntBASIC3.27□□□□□ -1.89
CHFRQ96EP1 AC135776.4-201ENST00000624300 1904 ntBASIC3.27□□□□□ -1.89
CHFRQ96EP1 RNU1-140P-201ENST00000365040 165 ntBASIC3.27□□□□□ -1.89
CHFRQ96EP1 Y_RNA.400-201ENST00000383963 111 ntBASIC3.27□□□□□ -1.89
CHFRQ96EP1 Y_RNA.446-201ENST00000384178 104 ntBASIC3.27□□□□□ -1.89
CHFRQ96EP1 RNU6-1289P-201ENST00000384431 106 ntBASIC3.27□□□□□ -1.89
CHFRQ96EP1 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CHFRQ96EP1 RNA5SP252-201ENST00000391131 119 ntBASIC3.27□□□□□ -1.89
CHFRQ96EP1 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.27□□□□□ -1.89
CHFRQ96EP1 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.27□□□□□ -1.89
CHFRQ96EP1 RPS15AP34-201ENST00000487776 387 ntBASIC3.27□□□□□ -1.89
CHFRQ96EP1 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC3.27□□□□□ -1.89
CHFRQ96EP1 RNA5SP272-201ENST00000516095 111 ntBASIC3.27□□□□□ -1.89
CHFRQ96EP1 NDUFB9P3-201ENST00000521269 501 ntBASIC3.27□□□□□ -1.89
CHFRQ96EP1 AL157871.3-201ENST00000557231 293 ntBASIC3.27□□□□□ -1.89
CHFRQ96EP1 MIR4423-201ENST00000580922 80 ntBASIC3.27□□□□□ -1.89
CHFRQ96EP1 AP000787.2-201ENST00000604432 568 ntBASIC3.27□□□□□ -1.89
CHFRQ96EP1 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.27□□□□□ -1.89
CHFRQ96EP1 AC093908.1-201ENST00000623125 8092 ntBASIC3.27□□□□□ -1.89
CHFRQ96EP1 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
CHFRQ96EP1 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CHFRQ96EP1 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
CHFRQ96EP1 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
CHFRQ96EP1 AC017071.1-201ENST00000564407 2204 ntBASIC3.26□□□□□ -1.89
CHFRQ96EP1 UBE2L2-201ENST00000254302 429 ntBASIC3.26□□□□□ -1.89
CHFRQ96EP1 RNU6-428P-201ENST00000362942 107 ntBASIC3.26□□□□□ -1.89
CHFRQ96EP1 Y_RNA.488-201ENST00000384403 102 ntBASIC3.26□□□□□ -1.89
CHFRQ96EP1 RNU6-882P-201ENST00000391025 103 ntBASIC3.26□□□□□ -1.89
CHFRQ96EP1 MIR1290-201ENST00000408735 78 ntBASIC3.26□□□□□ -1.89
CHFRQ96EP1 RNU6-257P-201ENST00000410238 98 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms