Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 AC108729.3-201ENST00000513484 108 ntBASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 RNA5SP268-201ENST00000516828 124 ntBASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 AL136363.2-201ENST00000604173 851 ntBASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 AC018889.1-201ENST00000605372 397 ntBASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 CTHRC1P1-201ENST00000605383 469 ntBASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 Y_RNA.111-201ENST00000363248 100 ntBASIC-0.79□□□□□ -2.54
LINC00643Q86TS7 RNU6-1066P-201ENST00000363573 105 ntBASIC-0.79□□□□□ -2.54
LINC00643Q86TS7 SNORD14C-201ENST00000365382 88 ntBASIC-0.79□□□□□ -2.54
LINC00643Q86TS7 SNORD114-12-201ENST00000365400 75 ntBASIC-0.79□□□□□ -2.54
LINC00643Q86TS7 RNU6-127P-201ENST00000390897 107 ntBASIC-0.79□□□□□ -2.54
LINC00643Q86TS7 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC-0.79□□□□□ -2.54
LINC00643Q86TS7 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC-0.79□□□□□ -2.54
LINC00643Q86TS7 NDUFA4P2-201ENST00000489989 244 ntBASIC-0.79□□□□□ -2.54
LINC00643Q86TS7 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC-0.79□□□□□ -2.54
LINC00643Q86TS7 AC021231.3-201ENST00000558497 370 ntBASIC-0.79□□□□□ -2.54
LINC00643Q86TS7 BCRP9-201ENST00000605312 388 ntBASIC-0.79□□□□□ -2.54
LINC00643Q86TS7 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC-0.8□□□□□ -2.54
LINC00643Q86TS7 MIR337-201ENST00000362281 93 ntBASIC-0.8□□□□□ -2.54
LINC00643Q86TS7 RNU4-15P-201ENST00000362613 141 ntBASIC-0.8□□□□□ -2.54
LINC00643Q86TS7 RNU6-833P-201ENST00000363486 107 ntBASIC-0.8□□□□□ -2.54
LINC00643Q86TS7 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC-0.8□□□□□ -2.54
LINC00643Q86TS7 AC002542.1-201ENST00000440683 193 ntBASIC-0.8□□□□□ -2.54
LINC00643Q86TS7 AC093019.1-201ENST00000443135 252 ntBASIC-0.8□□□□□ -2.54
LINC00643Q86TS7 RNU7-159P-201ENST00000459284 62 ntBASIC-0.8□□□□□ -2.54
LINC00643Q86TS7 snoU13.21-201ENST00000459368 105 ntBASIC-0.8□□□□□ -2.54
LINC00643Q86TS7 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC-0.8□□□□□ -2.54
LINC00643Q86TS7 AC036111.3-201ENST00000526389 112 ntBASIC-0.8□□□□□ -2.54
LINC00643Q86TS7 AP003072.2-201ENST00000527756 676 ntBASIC-0.8□□□□□ -2.54
LINC00643Q86TS7 ZKSCAN7P1-201ENST00000543668 673 ntBASIC-0.8□□□□□ -2.54
LINC00643Q86TS7 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC-0.8□□□□□ -2.54
LINC00643Q86TS7 AC115989.2-201ENST00000578640 563 ntBASIC-0.8□□□□□ -2.54
LINC00643Q86TS7 AC011155.2-201ENST00000623202 216 ntBASIC-0.8□□□□□ -2.54
LINC00643Q86TS7 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC-0.8□□□□□ -2.54
LINC00643Q86TS7 RNU6-1005P-201ENST00000384519 107 ntBASIC-0.81□□□□□ -2.54
LINC00643Q86TS7 PDCL2P1-201ENST00000419302 352 ntBASIC-0.81□□□□□ -2.54
LINC00643Q86TS7 AL356583.2-201ENST00000426536 280 ntBASIC-0.81□□□□□ -2.54
LINC00643Q86TS7 AL606517.2-201ENST00000442855 241 ntBASIC-0.81□□□□□ -2.54
LINC00643Q86TS7 SNORD126-201ENST00000459475 77 ntBASIC-0.81□□□□□ -2.54
LINC00643Q86TS7 RPL39P36-201ENST00000490784 156 ntBASIC-0.81□□□□□ -2.54
LINC00643Q86TS7 AC114981.1-201ENST00000503897 678 ntBASIC-0.81□□□□□ -2.54
LINC00643Q86TS7 SNORD111.1-201ENST00000516421 86 ntBASIC-0.81□□□□□ -2.54
LINC00643Q86TS7 RNA5SP94-201ENST00000516917 108 ntBASIC-0.81□□□□□ -2.54
LINC00643Q86TS7 RPL21P136-201ENST00000605378 396 ntBASIC-0.81□□□□□ -2.54
LINC00643Q86TS7 AL512643.1-201ENST00000635735 524 ntBASIC-0.81□□□□□ -2.54
LINC00643Q86TS7 RNU6-1207P-201ENST00000384343 107 ntBASIC-0.82□□□□□ -2.54
LINC00643Q86TS7 SNORA8.2-201ENST00000384372 139 ntBASIC-0.82□□□□□ -2.54
LINC00643Q86TS7 MIR301A-201ENST00000385261 86 ntBASIC-0.82□□□□□ -2.54
LINC00643Q86TS7 MIR892B-201ENST00000401279 77 ntBASIC-0.82□□□□□ -2.54
LINC00643Q86TS7 AL359634.1-202ENST00000404721 284 ntBASIC-0.82□□□□□ -2.54
LINC00643Q86TS7 RNU2-59P-201ENST00000410482 191 ntBASIC-0.82□□□□□ -2.54
LINC00643Q86TS7 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC-0.82□□□□□ -2.54
LINC00643Q86TS7 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC-0.82□□□□□ -2.54
LINC00643Q86TS7 AC092427.1-201ENST00000439177 601 ntBASIC-0.82□□□□□ -2.54
LINC00643Q86TS7 MTCO2P7-201ENST00000446518 666 ntBASIC-0.82□□□□□ -2.54
LINC00643Q86TS7 MIR548AO-201ENST00000579992 96 ntBASIC-0.82□□□□□ -2.54
LINC00643Q86TS7 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC-0.82□□□□□ -2.54
LINC00643Q86TS7 AL606834.3-201ENST00000602615 496 ntBASIC-0.82□□□□□ -2.54
LINC00643Q86TS7 RNA5SP467-201ENST00000391274 118 ntBASIC-0.83□□□□□ -2.54
LINC00643Q86TS7 RNU6-1025P-201ENST00000410629 104 ntBASIC-0.83□□□□□ -2.54
LINC00643Q86TS7 AL121578.1-201ENST00000428051 892 ntBASIC-0.83□□□□□ -2.54
LINC00643Q86TS7 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC-0.83□□□□□ -2.54
LINC00643Q86TS7 RNU7-14P-201ENST00000459331 62 ntBASIC-0.83□□□□□ -2.54
LINC00643Q86TS7 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC-0.83□□□□□ -2.54
LINC00643Q86TS7 MIR1322-201ENST00000638013 71 ntBASIC-0.83□□□□□ -2.54
LINC00643Q86TS7 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC-0.83□□□□□ -2.54
LINC00643Q86TS7 AC073544.1-201ENST00000600110 1595 ntBASIC-0.83□□□□□ -2.54
LINC00643Q86TS7 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC-0.84□□□□□ -2.54
LINC00643Q86TS7 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC-0.84□□□□□ -2.54
LINC00643Q86TS7 RNU6-72P-201ENST00000384285 79 ntBASIC-0.84□□□□□ -2.54
LINC00643Q86TS7 SNORA12.1-201ENST00000390873 148 ntBASIC-0.84□□□□□ -2.54
LINC00643Q86TS7 TIMM9P3-201ENST00000428659 274 ntBASIC-0.84□□□□□ -2.54
LINC00643Q86TS7 AC091860.1-201ENST00000505723 432 ntBASIC-0.84□□□□□ -2.54
LINC00643Q86TS7 AC025465.4-201ENST00000513422 638 ntBASIC-0.84□□□□□ -2.54
LINC00643Q86TS7 AC024995.1-201ENST00000523014 93 ntBASIC-0.84□□□□□ -2.54
LINC00643Q86TS7 EIF4A1P12-201ENST00000551910 141 ntBASIC-0.84□□□□□ -2.54
LINC00643Q86TS7 AL158211.1-201ENST00000566763 763 ntBASIC-0.84□□□□□ -2.54
LINC00643Q86TS7 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC-0.84□□□□□ -2.54
LINC00643Q86TS7 AP000484.1-201ENST00000620067 1252 ntBASIC-0.84□□□□□ -2.54
LINC00643Q86TS7 MIR8054-201ENST00000620877 86 ntBASIC-0.84□□□□□ -2.54
LINC00643Q86TS7 SCARNA4-202ENST00000625402 129 ntBASIC-0.84□□□□□ -2.54
LINC00643Q86TS7 MIR520G-201ENST00000385064 90 ntBASIC-0.85□□□□□ -2.55
LINC00643Q86TS7 MIR520H-201ENST00000385126 88 ntBASIC-0.85□□□□□ -2.55
LINC00643Q86TS7 MIR548H2-201ENST00000408874 88 ntBASIC-0.85□□□□□ -2.55
LINC00643Q86TS7 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC-0.85□□□□□ -2.55
LINC00643Q86TS7 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC-0.85□□□□□ -2.55
LINC00643Q86TS7 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC-0.85□□□□□ -2.55
LINC00643Q86TS7 UBE2D3P3-201ENST00000426992 425 ntBASIC-0.85□□□□□ -2.55
LINC00643Q86TS7 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC-0.85□□□□□ -2.55
LINC00643Q86TS7 snoU109.2-201ENST00000459316 135 ntBASIC-0.85□□□□□ -2.55
LINC00643Q86TS7 HMGN2P26-201ENST00000463169 339 ntBASIC-0.85□□□□□ -2.55
LINC00643Q86TS7 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC-0.85□□□□□ -2.55
LINC00643Q86TS7 AP003716.2-201ENST00000528260 108 ntBASIC-0.85□□□□□ -2.55
LINC00643Q86TS7 MIR3192-201ENST00000584920 77 ntBASIC-0.85□□□□□ -2.55
LINC00643Q86TS7 AC133794.1-201ENST00000602731 914 ntBASIC-0.85□□□□□ -2.55
LINC00643Q86TS7 AC104695.3-201ENST00000604052 296 ntBASIC-0.85□□□□□ -2.55
LINC00643Q86TS7 RBM11P1-201ENST00000604951 799 ntBASIC-0.85□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 123.8 ms