Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC108729.3-201ENST00000513484 108 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 RNA5SP148-201ENST00000516527 94 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 AC027176.1-201ENST00000560204 514 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 AL713866.2-201ENST00000603579 219 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 AL355297.2-201ENST00000604792 129 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 AC009229.3-201ENST00000608056 282 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 AL159153.1-201ENST00000619688 317 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 AC012640.5-201ENST00000623897 319 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 MIR1302-1-201ENST00000637932 143 ntBASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
PDLIM3Q53GG5 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 RNU6-1285P-201ENST00000363480 105 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 SNORA25.6-201ENST00000364121 118 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 Y_RNA.796-201ENST00000364268 102 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 Y_RNA.799-201ENST00000364992 102 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 Y_RNA.339-201ENST00000365325 102 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 DEFA7P-201ENST00000382676 285 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 SNORA6-201ENST00000384033 151 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 RNU6-968P-201ENST00000384076 107 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 MIR9-1-201ENST00000385198 89 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 SNORA12-201ENST00000391162 147 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 RNU6-1050P-201ENST00000410388 107 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 AL133396.1-201ENST00000432048 687 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 RPL23AP50-201ENST00000434149 455 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 AC112220.1-201ENST00000434628 355 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 SNRPEP8-201ENST00000442866 260 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 Y_RNA.635-201ENST00000459041 101 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 RNU6-1053P-201ENST00000515930 101 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 RNU6-559P-201ENST00000516151 98 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 RNU6-1016P-201ENST00000516689 94 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 AL034555.1-201ENST00000604816 211 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 AL138963.2-201ENST00000605137 226 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 PISRT1.1-201ENST00000616930 107 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 U4atac.1-201ENST00000618345 95 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 MIR5739-201ENST00000619803 80 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 MTND4LP32-201ENST00000636111 270 ntBASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
PDLIM3Q53GG5 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 MIR6073-201ENST00000352083 89 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 Y_RNA.58-201ENST00000362807 102 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 Y_RNA.154-201ENST00000363624 102 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 RNY3P1-201ENST00000365085 102 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 RNY3-201ENST00000365484 102 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 Y_RNA.490-201ENST00000384413 102 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 RNU6-331P-201ENST00000384724 107 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 Y_RNA.594-201ENST00000410373 140 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 Y_RNA.604-201ENST00000410574 102 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 RNU2-63P-201ENST00000410792 194 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AL590556.1-201ENST00000423231 483 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AL353705.4-201ENST00000449661 238 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AC145146.1-201ENST00000496370 254 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 HMGB1P35-201ENST00000503360 598 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AC021146.2-201ENST00000504736 556 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AC026782.1-201ENST00000512952 449 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 Y_RNA.670-201ENST00000516255 105 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 Y_RNA.675-201ENST00000516389 149 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 RNU6-965P-201ENST00000516721 96 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 RNU6-586P-201ENST00000517265 104 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 HSPE1P18-201ENST00000517602 280 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AC109329.1-201ENST00000518744 317 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AC115990.1-201ENST00000526957 301 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AC093027.1-201ENST00000546698 429 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AC007336.1-201ENST00000576365 3828 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 MIR5092-201ENST00000583139 88 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AL078605.1-201ENST00000603529 500 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 SNORA43.4-201ENST00000629559 138 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AC099654.5-201ENST00000636479 350 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AC233981.2-201ENST00000611524 1614 ntBASIC2.16□□□□□ -2.06
PDLIM3Q53GG5 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.15□□□□□ -2.06
PDLIM3Q53GG5 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 Y_RNA.67-201ENST00000362870 100 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 RNU6-743P-201ENST00000364151 106 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 RNU6-142P-201ENST00000384019 107 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 SNORA29-201ENST00000384183 140 ntBASIC2.15□□□□□ -2.07
PDLIM3Q53GG5 RNU6-842P-201ENST00000384269 107 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 162.1 ms