Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC019205.3-201ENST00000424573 156 ntBASIC2.48□□□□□ -2.01
COL28A1Q2UY09 AL356320.1-201ENST00000429616 163 ntBASIC2.48□□□□□ -2.01
COL28A1Q2UY09 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.48□□□□□ -2.01
COL28A1Q2UY09 GPM6BP3-201ENST00000442797 145 ntBASIC2.48□□□□□ -2.01
COL28A1Q2UY09 AC016700.2-201ENST00000446011 156 ntBASIC2.48□□□□□ -2.01
COL28A1Q2UY09 AC079354.2-201ENST00000453523 154 ntBASIC2.48□□□□□ -2.01
COL28A1Q2UY09 AL353752.1-201ENST00000454946 260 ntBASIC2.48□□□□□ -2.01
COL28A1Q2UY09 SNRPGP7-201ENST00000469016 106 ntBASIC2.48□□□□□ -2.01
COL28A1Q2UY09 AC015911.1-201ENST00000495111 156 ntBASIC2.48□□□□□ -2.01
COL28A1Q2UY09 RNU6-1053P-201ENST00000515930 101 ntBASIC2.48□□□□□ -2.01
COL28A1Q2UY09 RNU6-277P-201ENST00000516272 106 ntBASIC2.48□□□□□ -2.01
COL28A1Q2UY09 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.48□□□□□ -2.01
COL28A1Q2UY09 MIR5696-201ENST00000578474 85 ntBASIC2.48□□□□□ -2.01
COL28A1Q2UY09 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.48□□□□□ -2.01
COL28A1Q2UY09 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.48□□□□□ -2.01
COL28A1Q2UY09 AC063943.3-201ENST00000615562 356 ntBASIC2.48□□□□□ -2.01
COL28A1Q2UY09 AC008121.3-201ENST00000618726 433 ntBASIC2.48□□□□□ -2.01
COL28A1Q2UY09 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
COL28A1Q2UY09 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
COL28A1Q2UY09 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
COL28A1Q2UY09 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
COL28A1Q2UY09 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.47□□□□□ -2.01
COL28A1Q2UY09 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.47□□□□□ -2.01
COL28A1Q2UY09 Y_RNA.70-201ENST00000362886 110 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 MT-TD-201ENST00000387419 68 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 Y_RNA.595-201ENST00000410403 105 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 Y_RNA.604-201ENST00000410574 102 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 AC007064.1-201ENST00000412238 351 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 USP9YP30-201ENST00000430729 455 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 AC112220.1-201ENST00000434628 355 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 CR769767.1-201ENST00000436337 346 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
COL28A1Q2UY09 AL161788.1-201ENST00000441805 169 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.47□□□□□ -2.01
COL28A1Q2UY09 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.47□□□□□ -2.01
COL28A1Q2UY09 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.47□□□□□ -2.01
COL28A1Q2UY09 RPPH1-2P-201ENST00000516688 293 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 SNORA31.16-201ENST00000516773 139 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 Y_RNA.708-201ENST00000516950 96 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 SNORA48.11-201ENST00000517015 89 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.47□□□□□ -2.01
COL28A1Q2UY09 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.47□□□□□ -2.01
COL28A1Q2UY09 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.47□□□□□ -2.01
COL28A1Q2UY09 MIR4781-201ENST00000585250 76 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 AC011494.1-201ENST00000596454 237 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 AL078605.1-201ENST00000603529 500 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 AL670379.2-201ENST00000604983 252 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 AL138963.2-201ENST00000605137 226 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 AC005520.5-201ENST00000613926 164 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 U4atac.1-201ENST00000618345 95 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.47□□□□□ -2.01
COL28A1Q2UY09 AC080100.1-201ENST00000624239 5356 ntBASIC2.47□□□□□ -2.01
COL28A1Q2UY09 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
COL28A1Q2UY09 RNU5B-2P-201ENST00000363036 113 ntBASIC2.46□□□□□ -2.02
COL28A1Q2UY09 RNU6-867P-201ENST00000364956 107 ntBASIC2.46□□□□□ -2.02
COL28A1Q2UY09 Y_RNA.355-201ENST00000365462 98 ntBASIC2.46□□□□□ -2.02
COL28A1Q2UY09 RNU6-968P-201ENST00000384076 107 ntBASIC2.46□□□□□ -2.02
COL28A1Q2UY09 MTCYBP2-201ENST00000407745 171 ntBASIC2.46□□□□□ -2.02
COL28A1Q2UY09 RNA5SP201-201ENST00000410316 124 ntBASIC2.46□□□□□ -2.02
COL28A1Q2UY09 Y_RNA.594-201ENST00000410373 140 ntBASIC2.46□□□□□ -2.02
COL28A1Q2UY09 RPS26P42-201ENST00000413485 326 ntBASIC2.46□□□□□ -2.02
COL28A1Q2UY09 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.46□□□□□ -2.02
COL28A1Q2UY09 AC090515.1-201ENST00000465295 476 ntBASIC2.46□□□□□ -2.02
COL28A1Q2UY09 RPL36AP21-201ENST00000490372 323 ntBASIC2.46□□□□□ -2.02
COL28A1Q2UY09 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC2.46□□□□□ -2.02
COL28A1Q2UY09 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.46□□□□□ -2.02
COL28A1Q2UY09 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.46□□□□□ -2.02
COL28A1Q2UY09 RNU6-586P-201ENST00000517265 104 ntBASIC2.46□□□□□ -2.02
COL28A1Q2UY09 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.46□□□□□ -2.02
COL28A1Q2UY09 AC018630.3-201ENST00000542637 96 ntBASIC2.46□□□□□ -2.02
COL28A1Q2UY09 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.46□□□□□ -2.02
COL28A1Q2UY09 CYP4A27P-201ENST00000567218 190 ntBASIC2.46□□□□□ -2.02
COL28A1Q2UY09 RPS3AP23-202ENST00000574601 686 ntBASIC2.46□□□□□ -2.02
COL28A1Q2UY09 Z98751.3-201ENST00000604447 521 ntBASIC2.46□□□□□ -2.02
COL28A1Q2UY09 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.46□□□□□ -2.02
COL28A1Q2UY09 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
COL28A1Q2UY09 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.45□□□□□ -2.02
COL28A1Q2UY09 AC069528.2-201ENST00000624849 1991 ntBASIC2.45□□□□□ -2.02
COL28A1Q2UY09 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
COL28A1Q2UY09 RNU4-15P-201ENST00000362613 141 ntBASIC2.45□□□□□ -2.02
COL28A1Q2UY09 SNORA29-201ENST00000384183 140 ntBASIC2.45□□□□□ -2.02
COL28A1Q2UY09 RNU6-842P-201ENST00000384269 107 ntBASIC2.45□□□□□ -2.02
COL28A1Q2UY09 RNU6-1050P-201ENST00000410388 107 ntBASIC2.45□□□□□ -2.02
COL28A1Q2UY09 Z82205.1-201ENST00000428456 297 ntBASIC2.45□□□□□ -2.02
COL28A1Q2UY09 MTND4P17-201ENST00000470444 350 ntBASIC2.45□□□□□ -2.02
COL28A1Q2UY09 SRIP1-201ENST00000489235 288 ntBASIC2.45□□□□□ -2.02
COL28A1Q2UY09 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.45□□□□□ -2.02
COL28A1Q2UY09 RN7SL636P-201ENST00000497504 294 ntBASIC2.45□□□□□ -2.02
COL28A1Q2UY09 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.45□□□□□ -2.02
COL28A1Q2UY09 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.45□□□□□ -2.02
COL28A1Q2UY09 RNA5SP320-201ENST00000516263 124 ntBASIC2.45□□□□□ -2.02
COL28A1Q2UY09 AC109446.1-201ENST00000566172 220 ntBASIC2.45□□□□□ -2.02
COL28A1Q2UY09 MIR1273D-201ENST00000577266 86 ntBASIC2.45□□□□□ -2.02
COL28A1Q2UY09 MIR3923-201ENST00000579521 83 ntBASIC2.45□□□□□ -2.02
COL28A1Q2UY09 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.45□□□□□ -2.02
COL28A1Q2UY09 AP000942.3-201ENST00000603702 160 ntBASIC2.45□□□□□ -2.02
COL28A1Q2UY09 AL049779.4-201ENST00000604500 156 ntBASIC2.45□□□□□ -2.02
COL28A1Q2UY09 AP000654.2-201ENST00000605633 586 ntBASIC2.45□□□□□ -2.02
COL28A1Q2UY09 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.45□□□□□ -2.02
COL28A1Q2UY09 MTND5P9-201ENST00000503854 1755 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms