Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL606534.2-204ENST00000635008 178 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.88□□□□□ -2.11
COL4A4P53420 TPTE2P4-201ENST00000258589 1605 ntBASIC1.88□□□□□ -2.11
COL4A4P53420 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC1.87□□□□□ -2.11
COL4A4P53420 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.87□□□□□ -2.11
COL4A4P53420 RNU6-266P-201ENST00000364225 107 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 Y_RNA.222-201ENST00000364264 102 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 RNU6-701P-201ENST00000384059 107 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 Y_RNA.473-201ENST00000384333 102 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 RNU6-393P-201ENST00000384475 107 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 RNU2-3P-201ENST00000410144 191 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 RPL21P24-201ENST00000413752 448 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 RPL31P2-201ENST00000413849 377 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 TOMM22P1-201ENST00000418578 312 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC1.87□□□□□ -2.11
COL4A4P53420 HMGB1P9-201ENST00000429856 646 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 AL645568.3-201ENST00000433683 316 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.87□□□□□ -2.11
COL4A4P53420 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.87□□□□□ -2.11
COL4A4P53420 SUMO1P2-201ENST00000452524 304 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 RPS24P6-201ENST00000452670 400 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 SNORD127-201ENST00000458892 86 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 AP000873.1-201ENST00000463987 400 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 RPL17P19-201ENST00000489069 552 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 AC114801.2-201ENST00000503825 781 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 AC022447.4-201ENST00000504053 364 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 RNU6-1143P-201ENST00000516125 104 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 RNA5SP384-201ENST00000516615 116 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 Y_RNA.708-201ENST00000516950 96 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
COL4A4P53420 CR383656.7-201ENST00000548164 174 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC1.87□□□□□ -2.11
COL4A4P53420 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.87□□□□□ -2.11
COL4A4P53420 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC1.87□□□□□ -2.11
COL4A4P53420 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.87□□□□□ -2.11
COL4A4P53420 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.87□□□□□ -2.11
COL4A4P53420 AC092447.9-201ENST00000603395 144 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.87□□□□□ -2.11
COL4A4P53420 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC1.87□□□□□ -2.11
COL4A4P53420 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
COL4A4P53420 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
COL4A4P53420 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC1.87□□□□□ -2.11
COL4A4P53420 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.87□□□□□ -2.11
COL4A4P53420 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.87□□□□□ -2.11
COL4A4P53420 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
COL4A4P53420 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
COL4A4P53420 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
COL4A4P53420 Y_RNA.151-201ENST00000363566 112 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 RNU6-371P-201ENST00000364283 108 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 Y_RNA.307-201ENST00000365022 117 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 SNORD82-201ENST00000365530 70 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 RNU6-128P-201ENST00000383976 107 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 Y_RNA.447-201ENST00000384184 113 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 Y_RNA.480-201ENST00000384364 102 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 Y_RNA.556-201ENST00000384677 113 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 MIR591-201ENST00000385290 95 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 RNU6-550P-201ENST00000391057 101 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 RNU2-21P-201ENST00000410368 188 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 Y_RNA.594-201ENST00000410373 140 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 RNU4-46P-201ENST00000410818 138 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 RPL23AP50-201ENST00000434149 455 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 PIGFP3-201ENST00000441918 722 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.86□□□□□ -2.11
COL4A4P53420 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.86□□□□□ -2.11
COL4A4P53420 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.86□□□□□ -2.11
COL4A4P53420 RPL23AP55-201ENST00000498163 452 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 RBBP4P6-201ENST00000508098 202 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 Y_RNA.661-201ENST00000516003 99 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 RNU6-120P-201ENST00000516077 103 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 RNU6-64P-201ENST00000517119 105 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 RNU1-54P-201ENST00000517181 120 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC1.86□□□□□ -2.11
COL4A4P53420 MIR5583-1-201ENST00000580941 59 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 MIR502-201ENST00000606349 86 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 AC009229.3-201ENST00000608056 282 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
COL4A4P53420 AC138627.2-201ENST00000624202 601 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
COL4A4P53420 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC1.86□□□□□ -2.11
COL4A4P53420 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.86□□□□□ -2.11
COL4A4P53420 AC007256.1-201ENST00000392253 2765 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 AC103710.2-202ENST00000641454 2853 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.86□□□□□ -2.11
COL4A4P53420 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.86□□□□□ -2.11
COL4A4P53420 RNU6-562P-201ENST00000362731 107 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 Y_RNA.234-201ENST00000364409 97 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 Y_RNA.350-201ENST00000365409 98 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 SNORD14.1-201ENST00000365609 90 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 RNU6-946P-201ENST00000383878 107 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 Y_RNA.399-201ENST00000383955 105 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 RNU6-214P-201ENST00000384130 107 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
COL4A4P53420 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC1.86□□□□□ -2.11
COL4A4P53420 USP9YP30-201ENST00000430729 455 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 AC092991.1-201ENST00000477176 376 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC1.86□□□□□ -2.11
COL4A4P53420 RNA5SP102-201ENST00000516865 106 ntBASIC1.86□□□□□ -2.11
COL4A4P53420 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
COL4A4P53420 SETP7-201ENST00000552169 453 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 300.6 ms