Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 Z82205.1-201ENST00000428456 297 ntBASIC2.08□□□□□ -2.08
SOX3P41225 USP9YP30-201ENST00000430729 455 ntBASIC2.08□□□□□ -2.08
SOX3P41225 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.08□□□□□ -2.08
SOX3P41225 AL161788.1-201ENST00000441805 169 ntBASIC2.08□□□□□ -2.08
SOX3P41225 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.08□□□□□ -2.08
SOX3P41225 GPM6BP3-201ENST00000442797 145 ntBASIC2.08□□□□□ -2.08
SOX3P41225 AL353705.4-201ENST00000449661 238 ntBASIC2.08□□□□□ -2.08
SOX3P41225 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.08□□□□□ -2.08
SOX3P41225 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.08□□□□□ -2.08
SOX3P41225 CYP2C59P-201ENST00000457790 269 ntBASIC2.08□□□□□ -2.08
SOX3P41225 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.08□□□□□ -2.08
SOX3P41225 AC104435.1-201ENST00000483483 166 ntBASIC2.08□□□□□ -2.08
SOX3P41225 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.08□□□□□ -2.08
SOX3P41225 FGF7P4-201ENST00000509595 295 ntBASIC2.08□□□□□ -2.08
SOX3P41225 SNORA31.16-201ENST00000516773 139 ntBASIC2.08□□□□□ -2.08
SOX3P41225 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.08□□□□□ -2.08
SOX3P41225 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.08□□□□□ -2.08
SOX3P41225 AC021231.3-201ENST00000558497 370 ntBASIC2.08□□□□□ -2.08
SOX3P41225 AL078605.1-201ENST00000603529 500 ntBASIC2.08□□□□□ -2.08
SOX3P41225 AC018462.2-201ENST00000605375 395 ntBASIC2.08□□□□□ -2.08
SOX3P41225 MIR6895-201ENST00000613497 78 ntBASIC2.08□□□□□ -2.08
SOX3P41225 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.08□□□□□ -2.08
SOX3P41225 MIR6873-201ENST00000622788 63 ntBASIC2.08□□□□□ -2.08
SOX3P41225 AC099654.5-201ENST00000636479 350 ntBASIC2.08□□□□□ -2.08
SOX3P41225 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SOX3P41225 Z82209.1-201ENST00000422141 2135 ntBASIC2.08□□□□□ -2.08
SOX3P41225 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.07□□□□□ -2.08
SOX3P41225 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
SOX3P41225 snoU2_19.1-201ENST00000362361 80 ntBASIC2.07□□□□□ -2.08
SOX3P41225 RNU4-15P-201ENST00000362613 141 ntBASIC2.07□□□□□ -2.08
SOX3P41225 RNU5E-4P-201ENST00000364931 120 ntBASIC2.07□□□□□ -2.08
SOX3P41225 RNA5SP240-201ENST00000365355 128 ntBASIC2.07□□□□□ -2.08
SOX3P41225 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.07□□□□□ -2.08
SOX3P41225 RNU6-1286P-201ENST00000383871 107 ntBASIC2.07□□□□□ -2.08
SOX3P41225 RNU6-1032P-201ENST00000384100 107 ntBASIC2.07□□□□□ -2.08
SOX3P41225 MIR221-201ENST00000385135 110 ntBASIC2.07□□□□□ -2.08
SOX3P41225 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.07□□□□□ -2.08
SOX3P41225 EIF4EP2-201ENST00000422816 654 ntBASIC2.07□□□□□ -2.08
SOX3P41225 AC079354.2-201ENST00000453523 154 ntBASIC2.07□□□□□ -2.08
SOX3P41225 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.07□□□□□ -2.08
SOX3P41225 RNU1-41P-201ENST00000516161 162 ntBASIC2.07□□□□□ -2.08
SOX3P41225 RNU1-48P-201ENST00000516400 162 ntBASIC2.07□□□□□ -2.08
SOX3P41225 RNU6-1016P-201ENST00000516689 94 ntBASIC2.07□□□□□ -2.08
SOX3P41225 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.07□□□□□ -2.08
SOX3P41225 AL034555.1-201ENST00000604816 211 ntBASIC2.07□□□□□ -2.08
SOX3P41225 AC016727.1-205ENST00000605437 569 ntBASIC2.07□□□□□ -2.08
SOX3P41225 LARP7P1-201ENST00000605576 316 ntBASIC2.07□□□□□ -2.08
SOX3P41225 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.07□□□□□ -2.08
SOX3P41225 AL132765.2-201ENST00000610812 351 ntBASIC2.07□□□□□ -2.08
SOX3P41225 AC008121.3-201ENST00000618726 433 ntBASIC2.07□□□□□ -2.08
SOX3P41225 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.07□□□□□ -2.08
SOX3P41225 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
SOX3P41225 RNU5B-2P-201ENST00000363036 113 ntBASIC2.06□□□□□ -2.08
SOX3P41225 SNORA29-201ENST00000384183 140 ntBASIC2.06□□□□□ -2.08
SOX3P41225 SNORA36A-201ENST00000384221 132 ntBASIC2.06□□□□□ -2.08
SOX3P41225 RNU6-842P-201ENST00000384269 107 ntBASIC2.06□□□□□ -2.08
SOX3P41225 RNU6-601P-201ENST00000384540 107 ntBASIC2.06□□□□□ -2.08
SOX3P41225 RNU6-1072P-201ENST00000384703 107 ntBASIC2.06□□□□□ -2.08
SOX3P41225 RNU6-443P-201ENST00000384780 107 ntBASIC2.06□□□□□ -2.08
SOX3P41225 MIR29B2-201ENST00000385055 81 ntBASIC2.06□□□□□ -2.08
SOX3P41225 RNU6-1050P-201ENST00000410388 107 ntBASIC2.06□□□□□ -2.08
SOX3P41225 RNU2-63P-201ENST00000410792 194 ntBASIC2.06□□□□□ -2.08
SOX3P41225 RNU4-14P-201ENST00000410858 122 ntBASIC2.06□□□□□ -2.08
SOX3P41225 RN7SKP192-201ENST00000411291 327 ntBASIC2.06□□□□□ -2.08
SOX3P41225 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.06□□□□□ -2.08
SOX3P41225 SNRPEP8-201ENST00000442866 260 ntBASIC2.06□□□□□ -2.08
SOX3P41225 AC093019.1-201ENST00000443135 252 ntBASIC2.06□□□□□ -2.08
SOX3P41225 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.06□□□□□ -2.08
SOX3P41225 AL513124.1-201ENST00000450410 614 ntBASIC2.06□□□□□ -2.08
SOX3P41225 Y_RNA.635-201ENST00000459041 101 ntBASIC2.06□□□□□ -2.08
SOX3P41225 AC090096.1-201ENST00000489168 390 ntBASIC2.06□□□□□ -2.08
SOX3P41225 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.06□□□□□ -2.08
SOX3P41225 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC2.06□□□□□ -2.08
SOX3P41225 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.06□□□□□ -2.08
SOX3P41225 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.06□□□□□ -2.08
SOX3P41225 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.06□□□□□ -2.08
SOX3P41225 RNU6-277P-201ENST00000516272 106 ntBASIC2.06□□□□□ -2.08
SOX3P41225 RNU6-567P-201ENST00000516746 107 ntBASIC2.06□□□□□ -2.08
SOX3P41225 RNU6-586P-201ENST00000517265 104 ntBASIC2.06□□□□□ -2.08
SOX3P41225 IGLV3-17-201ENST00000519099 244 ntBASIC2.06□□□□□ -2.08
SOX3P41225 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.06□□□□□ -2.08
SOX3P41225 MRPS36P4-201ENST00000534436 298 ntBASIC2.06□□□□□ -2.08
SOX3P41225 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.06□□□□□ -2.08
SOX3P41225 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.06□□□□□ -2.08
SOX3P41225 MIR1273D-201ENST00000577266 86 ntBASIC2.06□□□□□ -2.08
SOX3P41225 MIR5696-201ENST00000578474 85 ntBASIC2.06□□□□□ -2.08
SOX3P41225 MIR3923-201ENST00000579521 83 ntBASIC2.06□□□□□ -2.08
SOX3P41225 AC011494.1-201ENST00000596454 237 ntBASIC2.06□□□□□ -2.08
SOX3P41225 Z98751.3-201ENST00000604447 521 ntBASIC2.06□□□□□ -2.08
SOX3P41225 AC113139.1-201ENST00000605049 239 ntBASIC2.06□□□□□ -2.08
SOX3P41225 AC009318.2-201ENST00000610917 651 ntBASIC2.06□□□□□ -2.08
SOX3P41225 AC098657.3-201ENST00000620434 263 ntBASIC2.06□□□□□ -2.08
SOX3P41225 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
SOX3P41225 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
SOX3P41225 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.06□□□□□ -2.08
SOX3P41225 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
SOX3P41225 RNU6-1059P-201ENST00000363752 98 ntBASIC2.05□□□□□ -2.08
SOX3P41225 SNORA38-201ENST00000363946 132 ntBASIC2.05□□□□□ -2.08
SOX3P41225 RNU4-56P-201ENST00000364700 142 ntBASIC2.05□□□□□ -2.08
SOX3P41225 SNORA51.11-201ENST00000384442 131 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms