Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MT-TW-201ENST00000387382 68 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 SNORA26.3-201ENST00000391119 136 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 MIR1302-3-201ENST00000408128 138 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.47□□□□□ -2.01
HOXD3P31249 AIMP1P2-201ENST00000425294 312 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXD3P31249 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXD3P31249 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXD3P31249 Z96811.1-201ENST00000445880 108 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXD3P31249 HMGN1P18-201ENST00000457642 277 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 AL441985.1-201ENST00000457727 251 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 MRPS36P2-201ENST00000512569 299 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.47□□□□□ -2.01
HOXD3P31249 SCARNA17.1-201ENST00000516211 143 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 SCARNA17.2-201ENST00000516334 143 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 AC034114.1-201ENST00000520293 285 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.47□□□□□ -2.01
HOXD3P31249 AC016256.1-201ENST00000547971 354 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 MIR5695-201ENST00000579717 85 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 AC078899.3-201ENST00000599065 212 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 AL121655.1-201ENST00000605811 308 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.47□□□□□ -2.01
HOXD3P31249 AC107871.2-201ENST00000612894 502 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 SCARNA17.4-201ENST00000614296 143 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 MIR8062-201ENST00000621515 85 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
HOXD3P31249 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.47□□□□□ -2.01
HOXD3P31249 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
HOXD3P31249 AC002543.1-201ENST00000299783 1954 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.46□□□□□ -2.01
HOXD3P31249 RNU1-76P-201ENST00000362903 159 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 RNU6-1159P-201ENST00000362933 107 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 SNORA5B-201ENST00000363786 132 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 SNORA80A-201ENST00000363922 136 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 RNU6-702P-201ENST00000364982 107 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 Y_RNA.376-201ENST00000365638 108 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 RNU6-281P-201ENST00000384212 103 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 RNU6-472P-201ENST00000384299 107 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 RNU6-378P-201ENST00000384324 107 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 RNY3P4-201ENST00000384428 101 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 Y_RNA.526-201ENST00000384572 110 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 RPL21P38-201ENST00000418090 167 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXD3P31249 AL731563.1-201ENST00000442202 214 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXD3P31249 LINC01399-202ENST00000458450 244 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 RPL36AP48-201ENST00000485521 314 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 HMGB1P35-201ENST00000503360 598 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 SNORA40.15-201ENST00000516884 107 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
HOXD3P31249 AC004817.2-201ENST00000561794 651 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 MIR2682-201ENST00000580305 110 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 AC010620.2-201ENST00000600135 313 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 RNU6-91P-201ENST00000607774 107 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 MIR7106-201ENST00000612419 65 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 uc_338.25-201ENST00000613756 156 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 AC240442.1-201ENST00000616055 283 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 AC005296.1-201ENST00000616145 209 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 UCA1.1-201ENST00000620952 75 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 MIR7153-201ENST00000637758 57 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 AC138915.1-201ENST00000565427 1685 ntBASIC2.46□□□□□ -2.02
HOXD3P31249 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
HOXD3P31249 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
HOXD3P31249 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
HOXD3P31249 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
HOXD3P31249 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
HOXD3P31249 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.46□□□□□ -2.02
HOXD3P31249 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC2.45□□□□□ -2.02
HOXD3P31249 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.45□□□□□ -2.02
HOXD3P31249 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
HOXD3P31249 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.45□□□□□ -2.02
HOXD3P31249 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
HOXD3P31249 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
HOXD3P31249 RNU6-1010P-201ENST00000362757 107 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 Y_RNA.143-201ENST00000363520 106 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 AP002088.1-201ENST00000382740 395 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 RNU6-611P-201ENST00000384276 104 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 Y_RNA.483-201ENST00000384380 101 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 MIR215-201ENST00000384858 110 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 RNU6-159P-201ENST00000391080 106 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 RNU6-1093P-201ENST00000391194 107 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 RNU1-139P-201ENST00000391307 165 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 CBX3P9-201ENST00000402326 552 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 RN7SKP220-201ENST00000410611 288 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.45□□□□□ -2.02
HOXD3P31249 RPS15AP7-201ENST00000439294 405 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 AC096638.1-201ENST00000444678 216 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXD3P31249 RPS27P29-201ENST00000463110 252 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 AC067942.3-201ENST00000512025 362 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.45□□□□□ -2.02
HOXD3P31249 RNU6-1012P-201ENST00000516606 109 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 RNU6-570P-201ENST00000517051 105 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 HSPE1P20-201ENST00000538133 289 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.45□□□□□ -2.02
HOXD3P31249 AC110588.1-201ENST00000559699 137 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 MIR4659A-201ENST00000580269 81 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 143.4 ms