Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SNORD115-47-201ENST00000391226 86 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 Y_RNA.615-201ENST00000410769 117 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 SNAP23P1-201ENST00000433229 246 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 UBE2V1P8-201ENST00000437166 265 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.91□□□□□ -2.1
PTPN4P29074 AC083904.1-201ENST00000487828 231 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 AC082651.2-201ENST00000496833 166 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 AC011352.1-201ENST00000512300 793 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 RNU5F-2P-201ENST00000516066 82 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 RNU6-991P-201ENST00000516168 107 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 AC087854.1-201ENST00000519706 414 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.91□□□□□ -2.1
PTPN4P29074 AC025423.5-201ENST00000550230 219 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 MIR5089-201ENST00000580047 84 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.91□□□□□ -2.1
PTPN4P29074 AC011494.1-201ENST00000596454 237 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 AC080078.2-201ENST00000603766 501 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 AC107304.1-201ENST00000604229 296 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 AL034555.1-201ENST00000604816 211 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 AP000654.2-201ENST00000605633 586 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 AC104458.1-201ENST00000608243 463 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 Y_RNA.783-201ENST00000613546 102 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 MIR3688-2-201ENST00000636963 87 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.91□□□□□ -2.1
PTPN4P29074 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
PTPN4P29074 snoU2_19.1-201ENST00000362361 80 ntBASIC1.9□□□□□ -2.11
PTPN4P29074 RNU6-534P-201ENST00000364877 106 ntBASIC1.9□□□□□ -2.11
PTPN4P29074 MIR583-201ENST00000384846 75 ntBASIC1.9□□□□□ -2.11
PTPN4P29074 RNA5SP212-201ENST00000391223 107 ntBASIC1.9□□□□□ -2.11
PTPN4P29074 MIR1294-201ENST00000408503 142 ntBASIC1.9□□□□□ -2.11
PTPN4P29074 AL139156.1-201ENST00000412785 841 ntBASIC1.9□□□□□ -2.11
PTPN4P29074 AC244636.1-201ENST00000421152 228 ntBASIC1.9□□□□□ -2.11
PTPN4P29074 MTND1P4-201ENST00000435196 415 ntBASIC1.9□□□□□ -2.11
PTPN4P29074 AC244670.1-201ENST00000436879 112 ntBASIC1.9□□□□□ -2.11
PTPN4P29074 MTCO2P3-201ENST00000442543 421 ntBASIC1.9□□□□□ -2.11
PTPN4P29074 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.9□□□□□ -2.11
PTPN4P29074 AL353752.1-201ENST00000454946 260 ntBASIC1.9□□□□□ -2.11
PTPN4P29074 AC016632.1-201ENST00000503994 196 ntBASIC1.9□□□□□ -2.11
PTPN4P29074 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.9□□□□□ -2.11
PTPN4P29074 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.9□□□□□ -2.11
PTPN4P29074 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.9□□□□□ -2.11
PTPN4P29074 FAM157A-202ENST00000615155 405 ntBASIC1.9□□□□□ -2.11
PTPN4P29074 U1.36-201ENST00000620684 176 ntBASIC1.9□□□□□ -2.11
PTPN4P29074 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.9□□□□□ -2.11
PTPN4P29074 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.9□□□□□ -2.11
PTPN4P29074 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
PTPN4P29074 SNORD32A-201ENST00000364805 84 ntBASIC1.89□□□□□ -2.11
PTPN4P29074 RNU6-43P-201ENST00000384302 107 ntBASIC1.89□□□□□ -2.11
PTPN4P29074 Y_RNA.505-201ENST00000384489 102 ntBASIC1.89□□□□□ -2.11
PTPN4P29074 Y_RNA.597-201ENST00000410463 100 ntBASIC1.89□□□□□ -2.11
PTPN4P29074 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.89□□□□□ -2.11
PTPN4P29074 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.89□□□□□ -2.11
PTPN4P29074 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.89□□□□□ -2.11
PTPN4P29074 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.89□□□□□ -2.11
PTPN4P29074 AL359672.1-201ENST00000442302 409 ntBASIC1.89□□□□□ -2.11
PTPN4P29074 RPS29P25-201ENST00000481709 171 ntBASIC1.89□□□□□ -2.11
PTPN4P29074 RNA5SP182-201ENST00000516064 82 ntBASIC1.89□□□□□ -2.11
PTPN4P29074 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.89□□□□□ -2.11
PTPN4P29074 CTHRC1P1-201ENST00000605383 469 ntBASIC1.89□□□□□ -2.11
PTPN4P29074 AC064836.2-201ENST00000609491 462 ntBASIC1.89□□□□□ -2.11
PTPN4P29074 AL132822.1-201ENST00000617063 513 ntBASIC1.89□□□□□ -2.11
PTPN4P29074 SNORD98-201ENST00000636377 67 ntBASIC1.89□□□□□ -2.11
PTPN4P29074 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
PTPN4P29074 AC027514.1-201ENST00000588561 1603 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
PTPN4P29074 SNORD115-3-201ENST00000363100 82 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 Y_RNA.295-201ENST00000364918 102 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 Y_RNA.373-201ENST00000365600 103 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 RNU6-1329P-201ENST00000365664 107 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 RNU6-877P-201ENST00000383868 107 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 Y_RNA.453-201ENST00000384223 109 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 Y_RNA.573-201ENST00000384763 105 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 RNU6-332P-201ENST00000391193 108 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 AL357139.1-201ENST00000407792 426 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 FCF1P9-201ENST00000412546 282 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 RPL23AP95-201ENST00000426806 265 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 AL133396.1-201ENST00000432048 687 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 IFNA20P-201ENST00000436840 528 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.88□□□□□ -2.11
PTPN4P29074 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.88□□□□□ -2.11
PTPN4P29074 RNU6-718P-201ENST00000516166 105 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 TRAV32-201ENST00000553993 340 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 MIR3122-201ENST00000577243 73 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 MIR6845-201ENST00000613182 61 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 AL136221.1-201ENST00000621449 509 ntBASIC1.88□□□□□ -2.11
PTPN4P29074 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
PTPN4P29074 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
PTPN4P29074 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
PTPN4P29074 RNU6-254P-201ENST00000363377 107 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 SNORD14D-201ENST00000384390 87 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 SNORA26.3-201ENST00000391119 136 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
PTPN4P29074 RNU2-48P-201ENST00000410694 191 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 AP000275.1-201ENST00000411943 390 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.87□□□□□ -2.11
PTPN4P29074 NDUFA5P4-201ENST00000436704 385 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 AL603825.1-201ENST00000438481 80 ntBASIC1.87□□□□□ -2.11
PTPN4P29074 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.87□□□□□ -2.11
PTPN4P29074 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.87□□□□□ -2.11
PTPN4P29074 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 763.8 ms